Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2028 ATGACTCTTGAAGATTTCTTTACGTTGACTGAAATGAAAGATGGCCTCACAGCCCCTTCTCGAGTGCAAGAGTTGGTCTCTGTAATGAAGAAGGAGCAAGATTGTGTTGTTAAAAATGCTGGTGATGCGACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGTCTTGATCTTTTTGTTCAATTAGATGGACTTTGGTTCATAAACAGATGGTTAAAGGATGCCCAAAATTTGGGTGCTGATAATACAAATGATGGCTTCATTGAAGAATCAATTACTACAATGTTACGAGCAGTAGAAAAACTATATCTAGACAGTGAAAAGTCAATTTCATCTGGAATTTCGGTCACTGTTAATAACCTTCTTGGCCATCCCAGCTCTAAAGTGCAGGATAGAGCAAGAGCATTATTTGACCATTGGAATGGAGGTGGACTTGGAGATGCTGAACCTCGTGATAATTCAGATAGGGATAGACTCAACAATGAGAGTGATAAGATTGCCAGGGAGGAAGGCCAGCCATCTTGTGTGAATGATGCTGGCAATGACAATCATCGTGCATCTGAACTTGCTGGAGATGAGAAGTCTCTATTGGGAGGCCCAAATAGTCAGCTACAAGAGAAAGTTACTAGTAATCAGACACAGAGTGTTGACAATGCACTCCAGTCCTCTCTAAGTTTGGACTGTGAAGATATCAAAGAGAGATCAAGCCATGTTAATAGTGTTTTGGCTTCTGCTCAAGAAGCTACCGTAAGTGAATGTGAGACCACATTGGCTGGGACCTGTAGCTTACCTACCTCTAAACAAGGCAGTTTCGAAGGACAGCAAGATGATTTACAGTTAAATGACTTGTCCAAAAAGGAGAAGCAAGATCAAGATGTTAATGGTCCTCCTGAAGAATTAAAACCATCAGATATCTCTTTGGCATCTGCAAAGCCAGATCCTGAACCTGCTTCCACTGGTGATAGTGAAAAAGCACTGGAATCTGTGAAAGAAGAACCTGCTTTAGAACATAATGTTGAAAGCAATGAAAAGGTTGTTTGTCCAAAAAGAAGTGTTTCTGGTAGCATGAGAACGCCTGAATCTGATGGAATGAGTGAGATGGATGATTTCAGAGCCACAAGTTCTAGCAATCCACAGCTTCCCAAAGCATCAGAAAATGATGATGACAATTGTTCAAGAGTGTTGCCTGACTTATCTGTCACTGGAAGTAACTTGGAAAAACCTGACATGTCTTTCACCAAATCAGAATACGCCAGAGAAGTAAAGGAAAGCAAGGACCAAGAGTCTGATCAAGATGATGATACCTCAAATGGTTCTGATTCTTTTAATCAGGGCAAAGGTCCCAGAAGCCCTAACATTATTGACAAGAGTTCTGACATGGAAATTGAATACGGTAATGTTGATGCTTTAGAAGTTGCTCGACTAGTTGCCCAAGAAGTTGAGAGAGAATGTGTCAGCCCTGCAAAGGAAGGGAATGACCATGGTTCTAATTGTACCACAGATGGTTCTGATTCTTTTAAATGGCGAAATGGTCCCAAAAGCCCTAATATTATTGGCAAGAGTTGTGAAATTGAGCTTGAGTATGGTATGGTTGATGCTTTAGAAGTTGCCCGACAAGTTGCTCAGGAGGTTGAGAGAGAAGTTTCCAGCTCTTCAGAGAAAATCTCTGAAGGTGGAATTAGGCGGAGAGGCAGCCTTGATTCTGTAGGAAGAAAGGATGAAGTCACTCGTATCCAGCCTGAGGAAGTATCATCCAGGCAAAGCAACTCTGCTGAAGTGTGTTCGGAAGAGGTAGGACATATGACAGTTTTAGGTAATGTTGAGGCCGGACCAGATGACATGGACTCCTCGCAGGTGACTGAAGCAGCTCGTGACCCAGGAGGTAGTTCAGAGAAAAGTCTCTTTGATCTCAATGAAGACGTTGGATCTGATGATATGGATGTTTCTGTAAATGCTATGCCTACTATGCCAATACCTGTTGTCTCTGCTTCAAAACCTGCACAGTCTTCTGGGTTACCAATGGCCCCTCTGCAGTTTGAGGGGACCCACGGATGGAAAGGATCAGCTGCCACCAGTGCCTTTCGTCCTGCATCACCTCGTAAAAATTCTGATAGCGAGAAGAATGTTTCTGTTAGAAACTCTGACCTTTCCAAGCAGAGGCATTGTTGCCTGGATTTTGATCTGAATGTTGCTGAAGGTGAAGAAGGATTGGTAAAACAAGTTGGTGAATCTTCAGGCCTTCCTTCTGGCCAATCATCGGTGGAATTTAGTTCTAAAAGATCAAACAAGTTCGAATTGGATTTAAACAGTATCGGTGATGATGGTGATGTCCAACCTTCAAATCAGAGGATCGAGGGCCCACCCTTTTCTGGAAGAAATGGTTATTGGAGCCCATCACCTGCTTCTTCTTCGTCATCAATGCAACCTTCAGTACGGAACATTGATTTGAACGACAGACCATACTTTCAAACAGATTTAGTGGACCAAGGGCATAGTAAGTCATCTTCGATAACTGAACCATATAAACGGTCTAAACCGGGGACTCCTGTTATCTCTATTTTGGGTGCCAAGGTGGAAGTTGGTAGAAGAGAATATGTTCCCCAAACTTTGTCGCTGCCAAATGGGAAGGCTATTGAGCCAGCAATGGATCTTCCATTATCAGGAGCAGGTGGCATTTTAGGAATGGGGCCCCCACTATCCTACAATCATTCAAATGCTTTTGGGTATAATGGACTGACATCAGTGCCTGCTCTGTCTTTTTCGTCAGCCATGTACGGACCTTCTGGTGGCCCAGTTCCGTACATGGTAGACTCGAGAGGAACTCCAGTTGTGCCTCAGGTTGGGGGATCTTCGTCTACCGTCCTCTCATCTTACACTCAGCCTCCATTTATCGTAAGCATGACTGGAACGCAGCTTGGTTTAAATGGGGTTGGATCTTCACATCCCAACTTTGATCTAAACTCCGGCTTCACGATTGATGGCCCCAACAGAGACATGTTGACTGCAAGGCAATTTTTCTTTCCTGCTCAAGGCAGAGCCATTGAGGAGCATGTAAGGACCCTTCCACAGTCCTCTAGTTCTGGGGTTAGTGTGAAAAGAAAGGAACCAGACGGTGGTGCCTGGGAAACCTATCCACGTAGCTACAAACATCAGCAACCGCCATGGAAATAG 3192 0.4383 MTLEDFFTLTEMKDGLTAPSRVQELVSVMKKEQDCVVKNAGDATRQWAAVASTIAATENKDCLDLFVQLDGLWFINRWLKDAQNLGADNTNDGFIEESITTMLRAVEKLYLDSEKSISSGISVTVNNLLGHPSSKVQDRARALFDHWNGGGLGDAEPRDNSDRDRLNNESDKIAREEGQPSCVNDAGNDNHRASELAGDEKSLLGGPNSQLQEKVTSNQTQSVDNALQSSLSLDCEDIKERSSHVNSVLASAQEATVSECETTLAGTCSLPTSKQGSFEGQQDDLQLNDLSKKEKQDQDVNGPPEELKPSDISLASAKPDPEPASTGDSEKALESVKEEPALEHNVESNEKVVCPKRSVSGSMRTPESDGMSEMDDFRATSSSNPQLPKASENDDDNCSRVLPDLSVTGSNLEKPDMSFTKSEYAREVKESKDQESDQDDDTSNGSDSFNQGKGPRSPNIIDKSSDMEIEYGNVDALEVARLVAQEVERECVSPAKEGNDHGSNCTTDGSDSFKWRNGPKSPNIIGKSCEIELEYGMVDALEVARQVAQEVEREVSSSSEKISEGGIRRRGSLDSVGRKDEVTRIQPEEVSSRQSNSAEVCSEEVGHMTVLGNVEAGPDDMDSSQVTEAARDPGGSSEKSLFDLNEDVGSDDMDVSVNAMPTMPIPVVSASKPAQSSGLPMAPLQFEGTHGWKGSAATSAFRPASPRKNSDSEKNVSVRNSDLSKQRHCCLDFDLNVAEGEEGLVKQVGESSGLPSGQSSVEFSSKRSNKFELDLNSIGDDGDVQPSNQRIEGPPFSGRNGYWSPSPASSSSSMQPSVRNIDLNDRPYFQTDLVDQGHSKSSSITEPYKRSKPGTPVISILGAKVEVGRREYVPQTLSLPNGKAIEPAMDLPLSGAGGILGMGPPLSYNHSNAFGYNGLTSVPALSFSSAMYGPSGGPVPYMVDSRGTPVVPQVGGSSSTVLSSYTQPPFIVSMTGTQLGLNGVGSSHPNFDLNSGFTIDGPNRDMLTARQFFFPAQGRAIEEHVRTLPQSSSSGVSVKRKEPDGGAWETYPRSYKHQQPPWK* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2028 1063 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 496 1063 - -
Vra6g2028 1063 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 492 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 588 602 - -
Vra6g2028 1063 ProSiteProfiles TFIIS N-terminal domain profile. 73 154 IPR017923 -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 205 223 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 802 820 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 499 517 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 776 820 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 147 223 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 707 721 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 690 721 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 1026 1063 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 403 417 - -
Vra6g2028 1063 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 149 IPR035441 -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 324 351 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 443 458 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 493 519 - -
Vra6g2028 1063 Coils Coil 541 561 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 375 392 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 156 178 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 554 642 - -
Vra6g2028 1063 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 149 IPR035441 -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 419 439 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 292 463 - -
Vra6g2028 1063 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 492 - -
Vra6g2028 1063 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 496 1063 - -
Vra6g2028 1063 MobiDBLite consensus disorder prediction 554 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2028 Vra-Chr6 36862993 36869924 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vra6g2028 Med26 0.00032 No_clan