Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2013 ATGGTTACTACAGCGAAATCTCCCAATCATCACTCCTCGTCTACTGCTTCCCGACCTGCCGATGCCAACAGTCCCAAGTTCCCGCGAAAAAATCTTCCCTCGCCCTGGGCTCAAGTGGTTCGCGGCGGAGAATTGGAATCCGTGCCTGGCATTAACCAATCGCCTCCATCAGTGCCTGGCATTAACCAATCGCCTCCATCAACGTCATCCTCTACCTCATCACTGATTACGGACCAGGCCCCCTCGTCTGATTGTTCTCCCAAGGTCATTCCATCCTCGTCGCCGGCAATGGACAATTCTAACACGGTTGGTGTTGCCGATAGCTCGGATGACGCCGAGGACAATGCCGATCGTTCTAAAAAACCCGTTTGGAATAAACCCTCAAATGGTGTGGTCGTCGAAACTGGGCCGGTAATGGGTGCTGAATCGTGGCCCTCGTTGTCTGCCTCCACCAAAGGTTCTGTCAAATTGCCAGCTGAATCGTCCTCCAAGACCGTTGCTGATGGATCACTCTCAACTTCTCAGGTGCCAATGACTTCACAGGCTCCTCAGAAACAATCTAATACTAATGTAAATGCTAATCCTGGAACAAATTATAATGTGCCTGGTAGACAAAGATCGATGAAGCGGGTAGGTGGCAGTGGCATTGTGTCTGGTCCTTCCCAGAGCAACTTCTCTAATCCTCCTCCACCACCCCCACCGCCACCTTTTCCTGTATACCATCTCCCACCACCAGTTAGCTATGGTATGGTAACAGTGGTACCTGAGCCTGCTCCAAGAGATCATTACAGGAACGGTAATTGGGACCCACGATCAATGATGAGGGGTTTTGTGCCTGGGATGAATGAATATCGTGGTTCATCTCACAGGAATTATTTTGGGCATAATTCCCGAGGAGATGGTTCCTATCATAATAGCTATGGTAGCAGGCATGATCAAGATCGCCGAAATTATGGGAATACTAGAGACACTTTTGTACCTCAACCAAGGATGCCTCCAAGAGGATTGCTGAGGCATCCACCTCCTAGCCCTGCTGCTTTTGTGGGCCATCAGCCCATTGGACCATTTGCTAACCCCATGGGTTTTTCTGAGTTTTATTACTATCAGCCAGTAACAATGGACCAGTTTTCTGGTATGCCTTATTTCACGCCCGGCCCTCCTCTTGCAACATTCATTTCTGCTACTGAATCTGCTCTCTCCAATATGATACTCCGCCAAATTGAATATTACTTTAGTGATGCTAATTTGGTGAGAGACGAGTTTTTGAGGTCTAAAATGGATGAACAGGGTTGGGTTCCTGTTACTTTGATAGCAGACTTCCCTCGAGTTAAAAGTCTTACCACTAATGTTCAGTTGATACTGGATTCTATGAGAACTTCCACAATAGTGGAGGTGCTGGGTGACAAATTGAGAAGACATAACGACTGGATGAAATGGCTGTCTTCTAAAACACGATCTGAGTCTACTTCCACTTCATCGTCTCCTCGTGGATCAAGATCCAATAACTTGACAGCTAATTTTCAAGCTATAACACTGGAAGAAACTGCAGAGTCATGTAGTCTGCCTCAACTCTCCAATGGTGGTGCTACAGGAAGTAGCACTTAA 1605 0.4741 MVTTAKSPNHHSSSTASRPADANSPKFPRKNLPSPWAQVVRGGELESVPGINQSPPSVPGINQSPPSTSSSTSSLITDQAPSSDCSPKVIPSSSPAMDNSNTVGVADSSDDAEDNADRSKKPVWNKPSNGVVVETGPVMGAESWPSLSASTKGSVKLPAESSSKTVADGSLSTSQVPMTSQAPQKQSNTNVNANPGTNYNVPGRQRSMKRVGGSGIVSGPSQSNFSNPPPPPPPPPFPVYHLPPPVSYGMVTVVPEPAPRDHYRNGNWDPRSMMRGFVPGMNEYRGSSHRNYFGHNSRGDGSYHNSYGSRHDQDRRNYGNTRDTFVPQPRMPPRGLLRHPPPSPAAFVGHQPIGPFANPMGFSEFYYYQPVTMDQFSGMPYFTPGPPLATFISATESALSNMILRQIEYYFSDANLVRDEFLRSKMDEQGWVPVTLIADFPRVKSLTTNVQLILDSMRTSTIVEVLGDKLRRHNDWMKWLSSKTRSESTSTSSSPRGSRSNNLTANFQAITLEETAESCSLPQLSNGGATGSST* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2013 534 MobiDBLite consensus disorder prediction 144 204 - -
Vra6g2013 534 MobiDBLite consensus disorder prediction 1 234 - -
Vra6g2013 534 PANTHER LUPUS LA PROTEIN-RELATED 28 522 IPR045180 -
Vra6g2013 534 Gene3D - 391 482 IPR036388 -
Vra6g2013 534 CDD LAM 401 472 - -
Vra6g2013 534 SUPERFAMILY "Winged helix" DNA-binding domain 394 480 IPR036390 -
Vra6g2013 534 PANTHER LA-RELATED PROTEIN 1B 28 522 - -
Vra6g2013 534 MobiDBLite consensus disorder prediction 50 108 - -
Vra6g2013 534 MobiDBLite consensus disorder prediction 306 331 - -
Vra6g2013 534 SMART la 397 473 IPR006630 -
Vra6g2013 534 MobiDBLite consensus disorder prediction 1 21 - -
Vra6g2013 534 Pfam La domain 403 458 IPR006630 -
Vra6g2013 534 MobiDBLite consensus disorder prediction 484 503 - -
Vra6g2013 534 ProSiteProfiles La-type HTH domain profile. 393 482 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2013 Vra-Chr6 36754302 36758167 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2013 6 36754302 36758167 Vra6g2013 6 36754302 36758167 ECH
Vra6g2013 6 36754302 36758167 Vra5g1676 5 23111004 23115511 PCT