Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2010 ATGGGCCAAGTTATGTTTCTTTTGGGTAGCCTCATTGGATTATGCAGCTTCACAATCACTACCTTTGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCTACTTTTTATGGGGGTAGTGATGCTTCAGGCACTATGGGGGGAGCTTGTGGGTATGGGAATCTGTATGCAACTGGTTATGGAACTAGAACTGCAGCTTTAAGCACTGCCTTATTCAATGACGGAGCTTCCTGTGGCCAGTGCTACAAAATCATATGTGATTACAAAGCAGACTCAAGATGGTGCATCAAAGGAAGATCTGTCACCATAACCGCCACAAATTTTTGCCCTCCCAATTTTGCTCTTCCTAACAATAATGGAGGCTGGTGCAACCCACCCCTCAAGCATTTTGACATGGCCCAACCTGCATGGGAAAAGATTGGTATTTACAGAGGAGGAATCGTGCCTGTCTTATTCCAAAGGGTTCCATGCAAAAAGCACGGAGGGGTTAGGTTCAGTGTGAATGGAAGGGACTACTTTGAGCTTGTGTTGATCAGCAATGTGGGTGGGGCTGGATCCATCCAATCTGTGTCCATTAAAGGATCGAAAACTGAGTGGATGGCAATGTCAAGAAACTGGGGTTCTAATTGGCAATCCAATGCATATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACAACCACTGATGGAGAAACCAGAGTTTTCCAAAATATAGTTCCATCAAGTTGGAGTTTTGGCCAAACTTTCTCCAGCCCAGTTCAGTTCTAA 768 0.4518 MGQVMFLLGSLIGLCSFTITTFAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYATGYGTRTAALSTALFNDGASCGQCYKIICDYKADSRWCIKGRSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNVGGAGSIQSVSIKGSKTEWMAMSRNWGSNWQSNAYLNGQSLSFRVTTTDGETRVFQNIVPSSWSFGQTFSSPVQF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2010 255 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vra6g2010 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vra6g2010 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vra6g2010 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Vra6g2010 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Vra6g2010 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Vra6g2010 255 PANTHER EXPANSIN 11 255 - -
Vra6g2010 255 Gene3D - 162 255 IPR036749 -
Vra6g2010 255 SMART dpbb_1 64 152 IPR007112 -
Vra6g2010 255 SUPERFAMILY Barwin-like endoglucanases 20 180 IPR036908 -
Vra6g2010 255 Gene3D - 16 158 IPR036908 -
Vra6g2010 255 PANTHER EXPANSIN-A15 11 255 IPR002963 GO:0009664
Vra6g2010 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Vra6g2010 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Vra6g2010 255 Pfam Lytic transglycolase 64 151 IPR009009 -
Vra6g2010 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Vra6g2010 255 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vra6g2010 255 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Vra6g2010 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Vra6g2010 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Vra6g2010 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Vra6g2010 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Vra6g2010 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Vra6g2010 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Vra6g2010 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Vra6g2010 255 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2010 Vra-Chr6 36727555 36729228 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2010 6 36727555 36729228 Vra6g2010 6 36727555 36729228 ECH
Vra6g2010 6 36727555 36729228 Vra5g1678 5 23119753 23121385 PCT