Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2005 ATGCTGATATTCTTGCCACTGATGGAAGTAAAGAAGAAAAGCAGAAAGTGGAAATGCCAAATAATCACATTACAAAAAAGAACATGTAAGGCAGAAACAGCTTCAGTTTGCCTGAAAGATAGAGTCATGGGAGTGGGATTCTCAAAGGTGTTAACACACACAACAGACGATGAAATTCCAATTTCTTCGACAGATTCTGCTCCTCAACTCACCTACAAACAACCTCGGAAAAACCTCCCTTTTCCACGTTCTCTTGTTCCTCCTCCCATGCCAACCCAATGTTCTTCACAAACAGGACCTGTTCTTGGGAAGCCTTACGTTAAAATAAAGCACACGTACGAGATGAAGAAAGAGCTGGGAAGAGGCAAGTTTGGCGTGACTTATCTGTGTGTAGAGAAGGCCACAGCAATTTCCTATGCATGCAAATCCATAGCAAAGAAGGGTCCGCAAGAAGTTGAGAATGTTAGAAGAGAAGTTATGATTCTGCAGCATCTTTCAGGGCAACATAACATAGTGGAATTCAAGGGAGCTTACGAGGACAGGGAGAACGTGCATCTAGTAATGGAGTTGTGCAGTGGAGGTGAACTCTTTGACCGTATTGTTGCAAAAGGTAGACACTCGGAGCGTGAAGCGGCCACTGTGATGAGACAGATTGTGAAGGTGGTCGACGTGTGCCATTTCATGGGTGTGATGCATCGAGACCTCAAGCCAGAGAATTTCTTGTTCGCCACCAAGGACGAGGATGCCCCTTTGAAACTCACGGATTTTGGTTCCTCTGTCTTCTTTCACACTGGTGAGGTGTATAAAGATATTGTTGGAAATGCATATTACGTGGCTCCTGAGGTTTTGAAACGGAATTACGGAAAGGAGATAGATGTTTGGAATGCAGGAGTCATTTTATACATTCTCTTAAGTGGGGTGCCTCCATTTTGGGCTGAAACCGAGAAAGGCGTGTTTGATAATGTTTTGGGTGCTAAGTTAGATATGGATAGCGAGCCATGGCCTTCTACATCAGACGCTGCAAAAGATTTGATCAGAAAAATGCTTACTTATGACCCTAAGGAACGGATTACAGCTGCTGAGGCCCTTGAACATCCATGGTTGAAAGAAGCTGGTGAAGGATCAGAAAAGCATCCAGACAGTGCTGTTTTAAGTAGGATGGAAGAGTTTAAAGCAATGAACCAGATGAAGAAGCTTGCAATGAAGGTAATAGCAGAAAATCTTTCAGAGGAAGAAACAAAGGGCCCCAGACAAATGTTCAACAATATGGATACTGATGGCAGTGGCACTATCACATTTGAAGAACTCAAATCTGGATTATCCAGATTGGGTTCCCTGCCTAGTGAATCTGAAATAAGGCAGCTATTGAATGCTATTGGTAATGACAAGAATGGAACAATTAACTATTATGAATTCATTGCTGCCACCATGGATCGACACAGACTGGAGAAGGGGGGGAGTTTGTTCAAGGCTTTTCATTACTTTGACAAGGATGACAAGGGTTATATAACGAGAGATGAACTTAGGGAAGCTATCACTGTACACCAAATGGGAGATGAAGCTGCGATAGATGGAGTCTTCGAGGATGTAGACTCTGACAAAGATGGGAAAATTACCTATGAGGAATTTATGAGCATGATGAGAAACGAATGCTGA 1656 0.43 MLIFLPLMEVKKKSRKWKCQIITLQKRTCKAETASVCLKDRVMGVGFSKVLTHTTDDEIPISSTDSAPQLTYKQPRKNLPFPRSLVPPPMPTQCSSQTGPVLGKPYVKIKHTYEMKKELGRGKFGVTYLCVEKATAISYACKSIAKKGPQEVENVRREVMILQHLSGQHNIVEFKGAYEDRENVHLVMELCSGGELFDRIVAKGRHSEREAATVMRQIVKVVDVCHFMGVMHRDLKPENFLFATKDEDAPLKLTDFGSSVFFHTGEVYKDIVGNAYYVAPEVLKRNYGKEIDVWNAGVILYILLSGVPPFWAETEKGVFDNVLGAKLDMDSEPWPSTSDAAKDLIRKMLTYDPKERITAAEALEHPWLKEAGEGSEKHPDSAVLSRMEEFKAMNQMKKLAMKVIAENLSEEETKGPRQMFNNMDTDGSGTITFEELKSGLSRLGSLPSESEIRQLLNAIGNDKNGTINYYEFIAATMDRHRLEKGGSLFKAFHYFDKDDKGYITRDELREAITVHQMGDEAAIDGVFEDVDSDKDGKITYEEFMSMMRNEC* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2005 551 CDD STKc_CAMK 113 367 - -
Vra6g2005 551 CDD EFh 388 441 IPR002048 GO:0005509
Vra6g2005 551 ProSiteProfiles EF-hand calcium-binding domain profile. 411 446 IPR002048 GO:0005509
Vra6g2005 551 Pfam EF-hand domain pair 418 476 IPR002048 GO:0005509
Vra6g2005 551 Pfam EF-hand domain pair 488 548 IPR002048 GO:0005509
Vra6g2005 551 ProSiteProfiles Protein kinase domain profile. 113 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g2005 551 SMART efh_1 415 443 IPR002048 GO:0005509
Vra6g2005 551 SMART efh_1 522 550 IPR002048 GO:0005509
Vra6g2005 551 SMART efh_1 451 479 IPR002048 GO:0005509
Vra6g2005 551 SMART efh_1 487 515 IPR002048 GO:0005509
Vra6g2005 551 ProSitePatterns Protein kinases ATP-binding region signature. 119 147 IPR017441 GO:0005524
Vra6g2005 551 Pfam Protein kinase domain 113 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g2005 551 ProSitePatterns EF-hand calcium-binding domain. 424 436 IPR018247 -
Vra6g2005 551 Gene3D Phosphorylase Kinase; domain 1 115 195 - -
Vra6g2005 551 Gene3D - 394 547 - -
Vra6g2005 551 Gene3D Transferase(Phosphotransferase) domain 1 196 385 - -
Vra6g2005 551 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
Vra6g2005 551 ProSiteProfiles EF-hand calcium-binding domain profile. 518 551 IPR002048 GO:0005509
Vra6g2005 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vra6g2005 551 ProSitePatterns EF-hand calcium-binding domain. 531 543 IPR018247 -
Vra6g2005 551 SUPERFAMILY EF-hand 407 547 IPR011992 -
Vra6g2005 551 Gene3D - 386 477 - -
Vra6g2005 551 SMART serkin_6 113 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g2005 551 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 78 550 - -
Vra6g2005 551 SUPERFAMILY Protein kinase-like (PK-like) 96 388 IPR011009 -
Vra6g2005 551 ProSiteProfiles EF-hand calcium-binding domain profile. 483 517 IPR002048 GO:0005509
Vra6g2005 551 PANTHER SERINE/THREONINE-PROTEIN KINASE 78 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2005 Vra-Chr6 36699692 36702950 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra6g2005 Pkinase 1.7e-72 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2005 6 36699692 36702950 Vra6g2005 6 36699692 36702950 ECH