Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1987 ATGAACTGCTTTTGTTCTGGTACTCGTCGGAAGGATGTGGGCATCGAGAGCAGTTTAGCGTCAAACTCAAAGACAAAGGTGAAGAGAGCGGCTGCAACGAGTTACAGTTTTCGCGAGCTTGCAGCGGCGGCGAAGGGTTTTAACCAAGAGAACTTGATCGGGGAAGGAGGTTTTGGAAAGGTGTACAAGGGACGTCTCTCTACAGGACAGCTTGTGGCCATAAAACAATTACGTCTAGATGGTGAAACTCATCAGGGTAATCGGGAATTTGTGACGGAGGTTCTTATGTTGAGCCTCCTACACCATTCAAATCTTGTTAAATTGTATGGCTACTGCACCCATGGGGATCAAAGGCTTTTGGTATACGAATACATGCCCATGGGAAGCCTGGAACAACATCTCTCAGAGAAGAAACCACTGAGTTGGAGAACTCGACTGATGATTGGGGTGGGGGCTGCTCGGGGACTCCAGTATCTACACTGTATAGCGAATCCTCCTGTTATCTACCGGGACTTGAAATCTGCCAACATCTTGCTAGACAGCAATCTGCACCCAAAACTCTCTGACTTTGGGCTTGCGAAGCTAGGACCCGTTGGAGACAATACCCATGTTTCCACCAGAGTCATGGGAACATATGGGTACTGCGCTCCGGAGTATGCCATGAGTGGGAAATTAACTCTTAAATCTGATATCTACTGCTTTGGCGTCGTCTTGCTGGAGCTGATCACCGGACGCAAGGCCATGGATGTCACTAAGAAACAACGGGAGCAAAGCCTGGTTGCATGGGCTCGACCATATTTGAGCGACCGGAGAAAGGTTACGCAGATTGTTGACCCTCTTCTGCAAGGAAACTACCCTTTACGGTGTTTGCATAATGCGATTGCTATCACTGCAATGTGCCTACAGGAGCAACCCAATCTTCGTCCCTCCATAAGTGACATTGTTATTGCGTTGGAGTACCTTGCCTCTGAAAGTGTCTCTGAAGTCTCCAGGCACCGCCCACGCAGCCCACCACGCCAATCACTCTCACAATCCGATATCCAAACAGACCCACACTAG 1059 0.491 MNCFCSGTRRKDVGIESSLASNSKTKVKRAAATSYSFRELAAAAKGFNQENLIGEGGFGKVYKGRLSTGQLVAIKQLRLDGETHQGNREFVTEVLMLSLLHHSNLVKLYGYCTHGDQRLLVYEYMPMGSLEQHLSEKKPLSWRTRLMIGVGAARGLQYLHCIANPPVIYRDLKSANILLDSNLHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLELITGRKAMDVTKKQREQSLVAWARPYLSDRRKVTQIVDPLLQGNYPLRCLHNAIAITAMCLQEQPNLRPSISDIVIALEYLASESVSEVSRHRPRSPPRQSLSQSDIQTDPH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1987 352 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vra6g1987 352 PIRSF ILK 11 333 - -
Vra6g1987 352 SMART serkin_6 47 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1987 352 PANTHER OS07G0668900 PROTEIN 20 342 - -
Vra6g1987 352 ProSiteProfiles Protein kinase domain profile. 47 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1987 352 Gene3D Phosphorylase Kinase; domain 1 10 124 - -
Vra6g1987 352 Gene3D Transferase(Phosphotransferase) domain 1 125 337 - -
Vra6g1987 352 CDD STKc_IRAK 53 319 - -
Vra6g1987 352 MobiDBLite consensus disorder prediction 327 352 - -
Vra6g1987 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vra6g1987 352 SUPERFAMILY Protein kinase-like (PK-like) 26 319 IPR011009 -
Vra6g1987 352 PANTHER OS07G0668900 PROTEIN 20 342 - -
Vra6g1987 352 MobiDBLite consensus disorder prediction 336 352 - -
Vra6g1987 352 Pfam Protein kinase domain 48 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1987 Vra-Chr6 36576762 36578665 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vra6g1987 Pkinase 1.4e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1987 6 36576762 36578665 Vra6g1987 6 36576762 36578665 ECH