Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1984 ATGACAGAAAAAATGGTCTCTGCATCAAACCCTAACCCTAAAACTAAAAATGTTTACCACATCGGTGGTCTGCAAGTAGAATTTCCTTACCAACCATATGGGTCTCAATTTGCCTTTATGGGTAGAGTGATCTCTACCCTCAACCAGGCTCGGAGAGAAGGCCACTGTCACGCGTTGCTCGAGTCTCCCACTGGCACCGGCAAGTCCCTTTCGCTTCTCTGTTCATCTCTCGCTTGGCAGCAACACTATAAATCTAAACAAGACCCCCTCAATCCCCTCCCGGAGGCAACCACCGATCCTCTGGCTTATGGCGGCGGATTTGTTGTCGAGGAGCTTTCACTATCTTCCGCATCAGAAAACCCGGACCGTACGCAAACTGAGGCCAACAACAAGAAGCAGAAGAAAAAGGAAGCACCGACTATTTATTACGCTTCGAGAACGCACTCACAGATTTCTCAAGTGGTTCACGAATTGCGTAAAACTGCATACAGGGTACCAATGGCTGTGTTGGCGTCGCGGAAACATTACTGCACAAATAAAAGTATAATTGGCAAAGAGAATATCAATGAAGAATGTAAACTATTATTGAAAGATGAGGCAACAGGGTGTCCAGAATTCAAAAATGCTCATAAAGTCAAAGGTCATCCATCCCTTCAGAAAGGAGGATGCAATGAGGTGCATGACATAGAAGATCTAGTAAAAGTTGGTCAATTGGTCAAAGGGTGCTCTTATTATGCTGCTCGTTCTATGTCAGATGATGCACAATTGGTATTTTGTCCTTATAACTATATCATTAATCCAGTCATCCGGGCAGCAATGGATGTGGATATCAAAGGCGCCATAGTGATTCTTGATGAAGCTCATAATATAGAGGACATTGCTCGTGATGCTGGAAGTGTGGATATTGAAGAGGATGTTTTGGATAAACTACAAATGGAACTCCAGCAACTTTGTTCAATTAATACTGCAATTTACCAACCACTATATGAAATGACACAGGGCCTTACTAGTTGGATGGAACAGAAGAAAAACAAGCTCGAAAAACGTGATTTTCACCACTATGTATCGTATTGGACTGGTGATAATGCTTTAGGAGAGCTTGAAGAAGCAAATATTTCGAAGCAGTGCTTCCCTATCTTGCTGGAATGTGCTACCAAGGCAATCAAAGTTGCTACAGACTTGGAGACAGATGAACCGCATATAAGTGGCGCGGCAGTGATAACATTGGAAGGCTTATTCTCGTCGCTAACTTATTTCTTCTCAAGAAATGGATCTCACATGTTGGATTACCAGCTTGCTCTTCAGCGACGTGTTAGAAAAGATACTGGAAGAGCTACTGGAAACTGGACATGCACTTTTAGTTTATGGTGTTTGAATCCAGCAGTTGTGTTTAGAGATGTTGCTGATCTTTCTTTATCAATTATCTTGACTTCGGGAACACTGTCACCGTTGGCATCCTTTACTTCTGAGCTTGGAGTTCATTTTGAAACTACTCTAGAAGCTCCTCATGTAATTGATGTTGACTCACAGGTGTGGCCTGCTGTAATCTCCACTGGTCCTGACAATTATCCTTTGAATGCAAGCTATAAAACTGCAGATGGATATGCATTCCAGGATGCAGTTGGAAAATCTTTAGAGGAAATCTTCAAGATTGTTCCAGGCGGATGCCTTGTGTTCTTTCCAAGTTATAAATTGATGGACAAATTACGCAACCGCTGGTCTGAAACAGGTCAATGGTCTCGACTAAATGCGGAAAAGCCTCTTTTTGTCGAACCAAGAGGAGGAAGCCAAGATGATTTTGAATTGGTATTAAAGGGGTATTATGATTCAATTCATCACGAAAAAAGACCAGCGCGGGGAAGGAACAGAAGGATTAAGACAATAGATCTAAATCATGTGCATGCAGTTGATTCCCTACCGAATTCTAGAAAAAGAGGAGCAGCTTTACTTGGTGTTTGTCGAGGAAAGGTTTCTGAAGGAATTGATTTCTCTGATGATAATGCTAGAGTAGTTATTATTGTTGGTATTCCATTTCCAAATATAAATGATATTCAAGTTTCATTGAAGAAGAAATATAATGACACCTACAAATCATTCAAAAGTCTATTGAGTGGAAATGAGTGGTACTGCCACCAAGCATTCCGAGCTTTAAATCAAGCTGCAGGGCGCTGTATACGTCATAAATTTGATTATGGAGCAATTATCCTATTGGATGAACGTTTTCAAGAAGAAAGAAATAGGGCATTCATTTCAAAGTGGATAAGAAGACCGTTGAAATCATATGACAGCTTTGATTTGTCATTGGAGGGATTAAAGTCTTTCTTTGAGAATGCTAAGGAACACTATGGCATAAATACAGTGCATGCCACACAGAGTTTGGATATAAATGGGGATGATGTCCATAAGAAGGATCAGAATGCATGTTCCACAAGAAAAAATAATCAGAAGCTGAACAAGTCTGATAATGGAGATGGGAGAGAAACAACAATGATCGAGAATAGCATTTCTTCACCCACCCTAACCTCTCAAGATCTTGTTGAGTGTGAGCCATCAGCTCGAAAGAATAGTAGCACTTACAGTTGTAAATATCTCCCACAGTACCTTACAAAGACAGATCCAAGGTTCACCGCAATCATGCACGAGGAAACTTCCGTTGTCAAGGAAACCCCTTGTATAGACGTTGACTATGGTCCCAGTAGCCCTCGTTACTCCAAAGATGACAACTCTGGTTCCTTCATAACTGAGGCCCCTGCTCAAATTCCAGATCACGAGTCAAGTCTTTCAATGTCTTTGAATACTGGAAGCAAAAATTCTTCAAGGGCTCAGTCTTCAATTACAGTTACTCCTAAAAGGAGTGTAATTACAAATGATATTCCAGAAATGGAAAGTGTTAATTCTTACCATCATAAAAGGATGAGGCCCACAGTCACTCCTTATATAAACCTTGAAGAAGAAAACTTTATTGCACCTTGTGCCAGTCCTCCTCTTACACGGTCCAGAAAGAGCTCTGTAGTTGTTAGAGAGATAACTCAGGGAAGTGAATATGATTTTGAGAGGGTTTTGAAGTCAAATTCTCCTCCATTACTGATAAGCAATATACCCGGTTCATGTTCACCAACTGCTCCTCCACTAGACCAAAGATTATTGATATTTTGTTCAGTCTGCAAAAGTCCATTAGGCCGACCTGAGAACCATCTATATCTTAGGTGCTCGATGATTTCATCATCAAAAGTTCATCTAAGGTCCCTTTTGAAACAGAGGCTGAGAACTTGCAATACTGATACTTCAAAGAGTATTCCAGTTCTCATTACTGATTCTTTATTTGTTGATCAACGAATTTGCACTAGAATACCCAAAAGTGCACCAGAGCACAGTATTTGGTGTCCAGAAGATGGGTGTGTTTTCAGCACCATTTTCTGCCCCTTTTGCAGTAACGTTAGGAATTTGCTAGGAGTTCAGATCATGGCTACCGACTCATCAAATGTTCAGTTGCTTGACAAGATATTGTTTTACTTTGATTCATTGGAAGTGAAGAGCAGTGAGGAATCAGGGAGCATTGATTCAGGAAACGGGGATTTGTTGCCGGTTAATGACTCTGGTGAGAATAAAATTACTGTCTTGAATTCTATTGAAAAATATTCTTATCTTCACCGACCAGGGAATGCAGAAGTTTGGAAGACTGGGAAATCAAAGGATTAA 3699 0.4077 MTEKMVSASNPNPKTKNVYHIGGLQVEFPYQPYGSQFAFMGRVISTLNQARREGHCHALLESPTGTGKSLSLLCSSLAWQQHYKSKQDPLNPLPEATTDPLAYGGGFVVEELSLSSASENPDRTQTEANNKKQKKKEAPTIYYASRTHSQISQVVHELRKTAYRVPMAVLASRKHYCTNKSIIGKENINEECKLLLKDEATGCPEFKNAHKVKGHPSLQKGGCNEVHDIEDLVKVGQLVKGCSYYAARSMSDDAQLVFCPYNYIINPVIRAAMDVDIKGAIVILDEAHNIEDIARDAGSVDIEEDVLDKLQMELQQLCSINTAIYQPLYEMTQGLTSWMEQKKNKLEKRDFHHYVSYWTGDNALGELEEANISKQCFPILLECATKAIKVATDLETDEPHISGAAVITLEGLFSSLTYFFSRNGSHMLDYQLALQRRVRKDTGRATGNWTCTFSLWCLNPAVVFRDVADLSLSIILTSGTLSPLASFTSELGVHFETTLEAPHVIDVDSQVWPAVISTGPDNYPLNASYKTADGYAFQDAVGKSLEEIFKIVPGGCLVFFPSYKLMDKLRNRWSETGQWSRLNAEKPLFVEPRGGSQDDFELVLKGYYDSIHHEKRPARGRNRRIKTIDLNHVHAVDSLPNSRKRGAALLGVCRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVSLKKKYNDTYKSFKSLLSGNEWYCHQAFRALNQAAGRCIRHKFDYGAIILLDERFQEERNRAFISKWIRRPLKSYDSFDLSLEGLKSFFENAKEHYGINTVHATQSLDINGDDVHKKDQNACSTRKNNQKLNKSDNGDGRETTMIENSISSPTLTSQDLVECEPSARKNSSTYSCKYLPQYLTKTDPRFTAIMHEETSVVKETPCIDVDYGPSSPRYSKDDNSGSFITEAPAQIPDHESSLSMSLNTGSKNSSRAQSSITVTPKRSVITNDIPEMESVNSYHHKRMRPTVTPYINLEEENFIAPCASPPLTRSRKSSVVVREITQGSEYDFERVLKSNSPPLLISNIPGSCSPTAPPLDQRLLIFCSVCKSPLGRPENHLYLRCSMISSSKVHLRSLLKQRLRTCNTDTSKSIPVLITDSLFVDQRICTRIPKSAPEHSIWCPEDGCVFSTIFCPFCSNVRNLLGVQIMATDSSNVQLLDKILFYFDSLEVKSSEESGSIDSGNGDLLPVNDSGENKITVLNSIEKYSYLHRPGNAEVWKTGKSKD* 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1984 1232 Pfam DEAD_2 143 306 IPR010614 GO:0003677|GO:0003678|GO:0005524
Vra6g1984 1232 MobiDBLite consensus disorder prediction 115 138 - -
Vra6g1984 1232 SMART Cxpdneu3 563 743 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vra6g1984 1232 SMART deadxpd 24 322 IPR006554 GO:0003678|GO:0016818
Vra6g1984 1232 Gene3D - 522 766 IPR027417 -
Vra6g1984 1232 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 10 1114 IPR045028 -
Vra6g1984 1232 MobiDBLite consensus disorder prediction 902 947 - -
Vra6g1984 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 737 IPR027417 -
Vra6g1984 1232 MobiDBLite consensus disorder prediction 798 829 - -
Vra6g1984 1232 Pfam Helicase C-terminal domain 545 755 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Vra6g1984 1232 Gene3D - 32 347 IPR027417 -
Vra6g1984 1232 MobiDBLite consensus disorder prediction 897 947 - -
Vra6g1984 1232 CDD SF2_C_XPD 509 741 - -
Vra6g1984 1232 ProSitePatterns Glutaredoxin active site. 1134 1150 IPR011767 -
Vra6g1984 1232 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 22 346 IPR014013 GO:0005524
Vra6g1984 1232 PANTHER FANCONI ANEMIA GROUP J PROTEIN 10 1114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1984 Vra-Chr6 36554088 36568873 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1984 6 36554088 36568873 Vra6g1984 6 36554088 36568873 ECH