Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1946 ATGACCAGCGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGCCGGCGCCGGCGGCTCCGCACTCGGAGTTCAGATCCAGCAGCAGAGCCGAATGGCGCTCCCAGATTTCCTTCAGAGCGTGAATCTCAAGTACGTGAAATTAGGTTACCACTACTTGATCTCCAACCTCTTAACCCTATTTCTAGTTCCTTTGATCCTCGTCACGCTAATCCAGGTCTCCCAGACCACCGACCTCCACCACCTCTGGCTCCATCTCCAGTACAACCTCCTCACCATCCTTACCTGCTCCGGCGTCCTCGTCTTCGGCCTAACGCTTTACGCCGTCACGCGCCCACGCGCTGTCTACCTTCTAGACTCTGCCTGCTTCCGCCCCGCTGACCACCTCAAAGCCCCCTTCCGGAGTTTCATGGAGCACTCCCGCCTCACGGGAGACTTCGAGGAGTCGTCCCTGGATTTCCAGCGCAAGATCCTGGAACGCTCTGGACTCGGGGAGGAGACCTACGTCCCCGAGGCCATGCACTCTATTCCGCCGCAGCCGTCGATGGCTGCGGCCAGAGCGGAGGCGGAACAAGTAATGTTTGGTGCCTTGGATAATCTCTTCCAAAACACCAGCCTTAAGCCTAAGGATATTGGTATCCTTATTGTAAATTGTAGCTTGTTTAACCCTACGCCCTCGCTCTCGGCAATGATTGTTAATAAGTATAAATTGAGAGGGAACATTAGGAGCTTTAATTTGGGGGGGATGGGATGCAGTGCTGGGGTTATTGCGGTTGATCTTGCAAAGGACCTTCTGCAGATTCATAGGAACACTTATGCCGTGGTTGTTAGCACTGAGAACATTACTCAGAATTGGTACTTTGGGAACAAGAAGTCCATGCTCATCCCCAATTGCCTCTTCCGGGTCGGCTGTTCCGCACTGCTGCTGTCGAACAAGCTGGCCGATCGGAGGCGGGCGAAGTACCGGCTAGTCCATGTTGTGAGGACTCATCGCGGTGCCGATGACAAGGCGTTCCGGTGTGTTTACCAGGAGCAGGATGATGCTGGCAAGACTGGAGTTTCTTTGTCAAAGGATTTGATGGCAATTGCTGGTGGAGCACTGAAAACCAACATCACCACACTCGGTCCTTTGGTGCTACCAATCAGTGAGCAGCTTCTGTTTTTTGTGACTTTGCTGATGAAGAAGTTATTCAAGGCTGATGTGAAGCCTTACATACCGGATTTCAAGCTTGCTTTTGATCACTTTTGCATACATGCTGGAGGCAGGGCTGTGATTGATGAGCTGGAGAAGAACCTGCAGCTGCGTCCTGAGCATGTGGAGGCTTCTAGGATGACCCTGCACCGATTTGGGAACACTTCCTCTAGCTCCATTTGGTATGAATTGGCTTACATTGAAGCCAAAGGGAGGGTGAAGAAGGGCAACAGGGTTTGGCAAATTGCATTTGGAAGTGGTTTCAAATGTAACAGTGCTGTTTGGCAGGCACTGAGGAATATTAAGCCTTCTCCTAATGGACCATGGGAAGATTGCATCGATAAGTATCCTGTGGAAATTGTCACATAG 1557 0.5189 MTSGGGGGGGEGGAGAGGSALGVQIQQQSRMALPDFLQSVNLKYVKLGYHYLISNLLTLFLVPLILVTLIQVSQTTDLHHLWLHLQYNLLTILTCSGVLVFGLTLYAVTRPRAVYLLDSACFRPADHLKAPFRSFMEHSRLTGDFEESSLDFQRKILERSGLGEETYVPEAMHSIPPQPSMAAARAEAEQVMFGALDNLFQNTSLKPKDIGILIVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDLLQIHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGCSALLLSNKLADRRRAKYRLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFVTLLMKKLFKADVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLRPEHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRVKKGNRVWQIAFGSGFKCNSAVWQALRNIKPSPNGPWEDCIDKYPVEIVT* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1946 518 SUPERFAMILY Thiolase-like 323 492 IPR016039 GO:0016746
Vra6g1946 518 CDD CHS_like 98 491 - -
Vra6g1946 518 Pfam FAE1/Type III polyketide synthase-like protein 106 395 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vra6g1946 518 SUPERFAMILY Thiolase-like 100 317 IPR016039 GO:0016746
Vra6g1946 518 PIRSF Very_long_ch_3-ktacl-CoA_syn 35 518 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra6g1946 518 Gene3D - 133 493 IPR016039 GO:0016746
Vra6g1946 518 PANTHER 3-KETOACYL-COA SYNTHASE 4 27 517 - -
Vra6g1946 518 PANTHER 3-KETOACYL-COA SYNTHASE 27 517 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra6g1946 518 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 411 492 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1946 Vra-Chr6 36091067 36093200 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1946 6 36091067 36093200 Vra6g1946 6 36091067 36093200 ECH