Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1943 ATGGGAATGGGAGAAATTGCAGTGAGTGTGGTTTCAATGTTGCTGTTGATGGTTGGGTTAACAATGGGAATGCGTTTGAGTTCGACAACGGAATGGTACGCGTTGAGGGAGCTTCGATCGTCGTTGGGGATTAGGGCAAAGTATTGGCCCATAAAAACAGAACCGTGCCGGAACTGGACCGGAGTTCATTGCCGGAATGGTCGAGTTGTGGGTATAAACGTGTCCGGTTTGAGGAGAACCCGGTTGGGTAGCCTTAACCCAAGTTTTGAAGTGGGTTCTCTTGTGAATTTGACACTGTTGGAATCGTTTAATGCTTCTGGGTTCGTGCTTAATGGGTCTATTCCTGAGTGGTTGGGTGAGAGCATGAAGGTGTTGGATGTACTTGACCTTAGGCTTTGTTCTATTATGGGTTCGATTCCTAATTCAATTGGGGGGTTGAGTAGGTTGAAGGTTTTGGTGCTTTCAGGGAATTTTCTCACTGGTAAAATGCCTACAACGCTTGGGAATCTCACAAGACTGACTGTTCTTGATCTCTCTAATAACTCTCTTTCAGGGTATATGCCTGCTTCTGTGACTCAACTTGGGAATCTCACAAGGCTTGATCTTTCTTACAACTACTTGAGTGGGTCTGTTCCACTTAAACTGGGTGCCCTTTCGAGTTTGCAAAATTTGAACCTTTCTGGGAATTCTTTCACTGGGTCGGTTCCCTCTCAACTCGGTAACCTTTCTGAGTTGGTTGAGGTTGATCTTAGCAAAAATTTTCTGTCGGGTTCATTTTTTGGAAATTTGTCTTTTTCACGGCTCTCGGCCCTCGAGGTTCTCATTCTCAGCGACAATTCGTTTGATGGTGCTCTTCCTCATAATTTTAGCTCAACGCCCAGGTTGAGCTTTCTTGATGTGTCCAGTAACAATCTCACTGGGACACTGCCGAATTTCACCAGCTGGAATGATAGCTCTGCTGGTGCTGTGTTCAATCTGTCAAATAATATGTTCTATGGATTTCTGAACATGTCACTGTACAAGTTTGAAACTATTGATTTGTCAAGTAATTATTTGGAAGGTGAGGTGCAAGGTGGTGGTAATGTTATTGTAGATAGAAATTGCCTGCAGATGACTCCAAACCAGAGGAATTTGGAAGAGTGTAGAGCTTTTTATACTGCAAGAAATTTACCCTTTTCATTCCCAGAATCTAAGTCCAGCAGAAGGGTGGTATTCATACTGGTAGGAATATTTGGTGGGCTTGGCTTTATTGCGGTGCTGACATTGGTCCTTGTGCTGGTTCTAAAACAATGTCACAATCATAGAAGCTCGGAAGTTCAAAGGGGGACCAAAAAAGAGGGACCTGTTCAGGAAGGGGAAAGCCCTATACCTCCTAAGGATGCTGATTTTGTGCCTGGCGTGGGAGAAGCATTTAGTTCTGAGCAAATTATCCGTCTAACTGACAATTTTGCCGAAGCAAAAGTCATAAAGAATGGCCATTCCGGGGTCCTCTTCTTGGGAGTCTTGGAAGGTGGAGCAACTGTGGTTGTCAAAAAGATAGATTTGAATTTATTTAAGAGAGAATCATATGTCGTGGAATTGAGACTATTAAGTAAGGTTTCACATGCAAGATTGGTCCCAATCCTGGGCCACTGCTTGGACAATGAGAATGAGAAATGTATAGTTTACAAATACATGCCAAATAGAGATTTGGCTACTTCTTTGCACAGAGCCAATGAGTCAGATGGTAAATTACAGTCCCTGGATTGGATCACGAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCCTAGCCTACCTACATGAGTGCAGCCCTCCCCTTGTCCACAGGGATGTCCAAGCTAGCAGTATACTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGCCAGGTTACCGCCCAAGGAGATGTTCAACAGGGAGTCATCTCAAGGGTTTTCAACAAGCCATCTACTAGTGAAGGCGATCCTGGTAAATCATCAGTGACATGCACCTACGACGTGTACTGTTTCGGGAAGATTTTACTGGAACTGATTACAGGTAACATTGAAGTGAGCAAGTCAGATGATGGCACTACCAAAGAGTGGTTAGAGAAAACCTTGCCTTACATCACTCTGTACGATAAAGAGCGTGTGACTAAGATTGTTGACCCACAACTGATCGTGGATGAGGACCTATTGGAAGAGGTATGGGCTATGGCAATTGTGGCTCATGCATGCTTGAATCCAAAGCCTTCCAAACGTCCTCCAATGAGACATGTCCTAAAAGCATTGGAAAATCCATTGAAGATTGTGAGAGAAGATAATAGCAGCTCAGCGAGGTTGAGATCAAACTCTTCTAGGAAATCTTGGAGCACTGCTTTCTTTGGTAGCTGGAGACACAGTTCATCAGACAGTGTTGTTGCCACAACACATGCAAACAAAGAGAGTAGCAGTGACACTAAGAAATCAAGAGTAGGTTCTCAAAGTAGTGGAAATGATCACTCATCTTCCAACAAAAGGTCATCCAATGAAATTTTCCCTGAACCATTGGAAGTGCAAGATGTGGAGGCTGGAGAGGCAGGATAA 2571 0.4376 MGMGEIAVSVVSMLLLMVGLTMGMRLSSTTEWYALRELRSSLGIRAKYWPIKTEPCRNWTGVHCRNGRVVGINVSGLRRTRLGSLNPSFEVGSLVNLTLLESFNASGFVLNGSIPEWLGESMKVLDVLDLRLCSIMGSIPNSIGGLSRLKVLVLSGNFLTGKMPTTLGNLTRLTVLDLSNNSLSGYMPASVTQLGNLTRLDLSYNYLSGSVPLKLGALSSLQNLNLSGNSFTGSVPSQLGNLSELVEVDLSKNFLSGSFFGNLSFSRLSALEVLILSDNSFDGALPHNFSSTPRLSFLDVSSNNLTGTLPNFTSWNDSSAGAVFNLSNNMFYGFLNMSLYKFETIDLSSNYLEGEVQGGGNVIVDRNCLQMTPNQRNLEECRAFYTARNLPFSFPESKSSRRVVFILVGIFGGLGFIAVLTLVLVLVLKQCHNHRSSEVQRGTKKEGPVQEGESPIPPKDADFVPGVGEAFSSEQIIRLTDNFAEAKVIKNGHSGVLFLGVLEGGATVVVKKIDLNLFKRESYVVELRLLSKVSHARLVPILGHCLDNENEKCIVYKYMPNRDLATSLHRANESDGKLQSLDWITRLKIAIGAAEGLAYLHECSPPLVHRDVQASSILLDDKFEVRLGSLSQVTAQGDVQQGVISRVFNKPSTSEGDPGKSSVTCTYDVYCFGKILLELITGNIEVSKSDDGTTKEWLEKTLPYITLYDKERVTKIVDPQLIVDEDLLEEVWAMAIVAHACLNPKPSKRPPMRHVLKALENPLKIVREDNSSSARLRSNSSRKSWSTAFFGSWRHSSSDSVVATTHANKESSSDTKKSRVGSQSSGNDHSSSNKRSSNEIFPEPLEVQDVEAGEAG* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1943 856 Gene3D Transferase(Phosphotransferase) domain 1 559 783 - -
Vra6g1943 856 PANTHER OS03G0724300 PROTEIN 7 842 - -
Vra6g1943 856 PRINTS Leucine-rich repeat signature 173 186 - -
Vra6g1943 856 PRINTS Leucine-rich repeat signature 194 207 - -
Vra6g1943 856 ProSiteProfiles Protein kinase domain profile. 483 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1943 856 Gene3D Ribonuclease Inhibitor 262 376 IPR032675 -
Vra6g1943 856 Gene3D Ribonuclease Inhibitor 188 261 IPR032675 -
Vra6g1943 856 MobiDBLite consensus disorder prediction 437 458 - -
Vra6g1943 856 SUPERFAMILY L domain-like 40 336 - -
Vra6g1943 856 SUPERFAMILY Protein kinase-like (PK-like) 466 759 IPR011009 -
Vra6g1943 856 PANTHER OS01G0253100 PROTEIN 7 842 IPR045271 GO:0004714|GO:0006468
Vra6g1943 856 MobiDBLite consensus disorder prediction 817 839 - -
Vra6g1943 856 Gene3D Ribonuclease Inhibitor 30 187 IPR032675 -
Vra6g1943 856 Pfam Protein tyrosine and serine/threonine kinase 487 758 IPR001245 GO:0004672|GO:0006468
Vra6g1943 856 MobiDBLite consensus disorder prediction 801 856 - -
Vra6g1943 856 Pfam Leucine rich repeat 147 207 IPR001611 GO:0005515
Vra6g1943 856 SMART LRR_typ_2 194 217 IPR003591 -
Vra6g1943 856 SMART LRR_typ_2 146 169 IPR003591 -
Vra6g1943 856 SMART LRR_typ_2 218 242 IPR003591 -
Vra6g1943 856 SMART LRR_typ_2 170 193 IPR003591 -
Vra6g1943 856 SMART LRR_typ_2 268 291 IPR003591 -
Vra6g1943 856 Gene3D Phosphorylase Kinase; domain 1 460 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1943 Vra-Chr6 36055465 36060526 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vra6g1943 PK_Tyr_Ser-Thr 4.2e-20 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1943 6 36055465 36060526 Vra6g1943 6 36055465 36060526 ECH