Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1942 ATGGCCATAGCTCGGTTGGTTCGGCAAGCGAAACGCCCTCATGGATTGTGGGTGAAGATGGCAGCTGTGACTGTAATGGGTCTCTGTTTCATCTTTGTGTGGGGAGTATTTTCTTCTTCTTCTTCCTCTGTCACTTCCCAAAGGGAGAGTTTTGAGGACATTGCGGAACCCGTGTCTTCTTCTTCTTCTCACAAGCCGCAAAAGTTGAGAGATGAATCTAAAAAGGGTGGTGAGAGTGAGAAAAAGAGTAAGAGTAACGGTAATGGGTCTTCTCACTCTTCTGCCACGCGTCCTCACTCTGAACAACACAAGGGAAAGGACAACAAGAAAGAGAAGAAACACGTGCAGCATAAGGAGGACAAGGAGAAAGGGAATCATCAAGGGTCAGAGGAGCCTCAACCCCAACATGGCCAGGAAGAGAAAGAGAAAGAGAACGTGAAAGAGGAGGTGGAGGGTGAAGAAGAGAAAGTGGATCATGAGAGTGATGTGGATGTGGATGTGGATGCTGATGGTGGCAGTGATTTGTCTGAATCCGTGGATAAGGATGATTCCAAGGTGGTGGAAGATGCGGAGGAGTTGAGAAAAAAAAGCAAGGTAAAAGTGAAAGGACCCTTGTTTGATCCAAATGCTAGCTATAGCTGGAAATTGTGTAGTTCTAGAAGCAAGCATAATTACATTCCCTGCATTGATATTGAAGTTGGTGGTGGTAAAGTAACAAGCTACCGGCATACAGAGAGGAGTTGTCCTAGGACACCTCTTATGTGTCTGGTTCCTCTTCCTCATGAAGGGTATGGATCTCCACTGCCTTGGCCTGAGAGCAAATTGAAGATATTGTATAAGAATGTTGCACACCCGAAACTAGCTGCTTACATAAAGAGACATAATTGGTTGATGGAGTCTGAAGAGTATCTTACATTTCCCCAAAACCAATCCGAGTTCAAGGGAGGGATTCATCACTACCTTGAGTCCATTGAAGAGATGGTACCAGACATTGAATGGGGTAAAAACATTCGTGTTGTCCTGGACATTGGATGTACAGATTCGAGCTTTGCAGCTGCTCTTCTTGATAAGGATGTTTTAACATTATCACTAGGATTGAAGAATGATCTAGTGGACTTGGCTCAGGTGGCGCTTGAACGGGGTTTTCCAGCAGTGATTAGTCCTTTCAATAGAAGGAGACTTCCTTTTCCAAGTCAAGTTTTTGATGCTATACATTGTGCAGGTTGCAGCATACCTTGGCATTCCAATGGTGGAAAACTTCTATTGGAGATGAATAGGATTTTAAGACCCGGTGGATACTTTATTATGTCAACCAAACATGACAGCATTGAAGAAGAAGAAGCCATGACAACATTGACTGCATCTATTTGTTGGAATGTTCTGGCTCACAAAAGTGATGATGTTGGAGAAGTTGGAGTTAAAATATATCAGAAGCCTGAAGGAAACGACATATACGAACTGAGGAGGAAGAAAATTCCACCACTTTGCAAAGAAAATGAAAATCCTGATGCAGTTTGGTATGTTCCCATGAAGACATGTTTGCACCCTATTCCATCTGGAATTGAACAACATGGGGCAGAATGGCCTGAGGAATGGCCCAAGAGGCTTGAAACCTATCCTGATTGGGTGAACAACAAAGAGAAAGTGGTTGCAGACACCAATCACTGGAATGCTGTTGTTAATAAGTCATATATCAGTGGATTAGGCATTAACTGGACAAGTATTCGGAATGTAATGGACATGAAATCCATCTATGGAGGATTGGCTGTAGCTCTCTCTCAACAAAAGGTCTGGGTGATGAATGTAGTGCCTGTCCATGCACCTGATACACTTCCCATCATTTTTGAACGTGGGCTTGTTGGTATGTACCATGATTGGTGTGAGTCATTTGGCACTTATCCAAGAACATATGACCTTCTGCATGCTGATCATTTGTTCTCACGGCTCAAAAACAGGTGCAAGCAGCCTGTGTCCATTGTTGTTGAGATGGACCGTATAACAAGGCCAGGAGGTTGGACAATCATACGTGACAAAGTTGAAATTCTAAATCCATTGGAAGAAATATTGAAAAGCATGCAGTGGGAGATTAGGATGACTTTTGCTCAGGATAAGGAGGGTATCTTGTGTGCACAGAAAACTTTCTGGAGGCCTATTCCATTACTACACATTTTCTCTCACAAATCTTCATTTTCTACTGCAACAATGTCGATATCAAATTCGCTATCCTCAGTTCCCGCGCGTCTCACACTTCTCGCTCTCTTCTCCGCCACCACCTTTTACTGTCTCTACAAATCTCGTCGTTTAAGATACCTCAAACTATCCTTAAACCCTAACCCTAAACCTAAACCTAAGATCATATTCCTCTCAGAAACCGGAACCAGCAAAACCCTCGCTCTACGCCTCCACCGTCTCCTCGCCTCTAACGGCGTCGCATTCGACGTCGTCGATTCGCGGCACTACGAGCCCGAGGATCTTCCCAAGGAGACGCTTCTCATNCTCGTTGCCTCCACGTGGCAGGACGGCGCACCGCCGGATGCCTCCCGCTTCTTCGCCACGTGGCTCGCCGAAGCCTCCGCGGATTTTCGCGCCGGCTCCCTTCTCCTCTCGAGCTGCCGTGTGGCCGTCTTTGGCGTCGGGAGCCGAGCCTACGGCGAATCCTTCAACGCCGTCGCGAAGGGCCTCGCGACGCACCTGAGGGCGCTAGGNGCCAAGGAGGTGGTTCCGCTTTGCGAGGGGGATGTTGACGGTGGTGACCTGGACAAGGTTTTCGATCGGTGGTGTGAGAAGGTTCTGGCCGTTTTGAAAGGAGGTGGTGTTNCGGAATGCGATGATGGTGATGGTGGTGGTGCTCTGGATTATGGCGTCTATTCGAGTTCCGAAGAGGAGTCTGATGTGGAGAGTGAGATTGTTGATCTTGAGGACATTGCTGGTAAAGCTCCTTCACGGCGGAAGACATTGGCTAGTGGGGAAGAGAGTAATGGGAAATTGAGTGGCAGAAAGGAAATGGTGACTCCGGTGATTCGAGCAAATTTAGTGAAGCAGGGGTATAAAATCATTGGGTCGCATAGCGGTGTCAAGATTTGTAGATGGACAAAGGCGCAGCTTCGTGGTCGAGGTGGTTGCTATAAGCACTCGTTTTATGGAATCGAGAGTCACAGATGCATGGAGGCAACCCCTAGCTTGGCATGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGGGAAAAGTTGGCAATGGGAGATGGATGATCCGGTAGAGATAGTAAATTCTGCAGTAGACCTCCACACAAATATGGTTAAACAAATGAAAGGAGTTCCTGGAGTCACCTTGGAGCGATTAAATGAAGGTCTCTCACCTCGTCATTGTGCATTATCTCTTGTTGGTGAACCTATAATGTATCCAGAGATAAATGCACTTGTGGATGAGCTGCACAAAAGGAGGATTTCCACTTTTCTAGTTACAAATGCACAATTTCCTGAGAAAATTAAATCGCTGAAACCTATTACCCAGTTATATGTCAGTGTAGATGCTGCAACAAAGGACTCTTTGAAGGCAATTGATAGACCACTATTTGGCGATTTCTGGGAGAGATTCATTGATTCCTTGACTGCTTTAAGGGAAAAACATCAGCGAACTGTATACCGCCTGACCCTGGTGAAAGGTTGGAATACTGAAGATGTTGATGCTTATTCTAAGCTCTTTAGTATAGGAGATCCTGACTTTGTTGAAATCAAGGGAGTTACGTATTGTGGCACGTCCACTACATCAAAAATCACAATGGAAAATGTCCCTTGGCATGCTGATGTGAAAGCTTTTTCAGAGGCCCTAGCTTTGAAAAGTCAAGGAGAGTACGAAGTTGCATGTGAGCATGCTCACTCGTGCTGTGTCCTCTTAGCAAAAACCAACAAGTTCAAAATCGATGGCCGGTGGTATACATGGATAGACTATGAAAAATTTCATGATCTGGTGGCATCTGGAAAAACTTTTGACAGCAGAGATTACATGACTGCCACACCATCCTGGGCCATCTATGGATCCAAGGAAGGTGGATTTGATCCAGGGCAATTGAGATATAAGAAAGAGAGACATCACAAGTCGAGCCACAATCAATCAGGTTAG 4134 0.4555 MAIARLVRQAKRPHGLWVKMAAVTVMGLCFIFVWGVFSSSSSSVTSQRESFEDIAEPVSSSSSHKPQKLRDESKKGGESEKKSKSNGNGSSHSSATRPHSEQHKGKDNKKEKKHVQHKEDKEKGNHQGSEEPQPQHGQEEKEKENVKEEVEGEEEKVDHESDVDVDVDADGGSDLSESVDKDDSKVVEDAEELRKKSKVKVKGPLFDPNASYSWKLCSSRSKHNYIPCIDIEVGGGKVTSYRHTERSCPRTPLMCLVPLPHEGYGSPLPWPESKLKILYKNVAHPKLAAYIKRHNWLMESEEYLTFPQNQSEFKGGIHHYLESIEEMVPDIEWGKNIRVVLDIGCTDSSFAAALLDKDVLTLSLGLKNDLVDLAQVALERGFPAVISPFNRRRLPFPSQVFDAIHCAGCSIPWHSNGGKLLLEMNRILRPGGYFIMSTKHDSIEEEEAMTTLTASICWNVLAHKSDDVGEVGVKIYQKPEGNDIYELRRKKIPPLCKENENPDAVWYVPMKTCLHPIPSGIEQHGAEWPEEWPKRLETYPDWVNNKEKVVADTNHWNAVVNKSYISGLGINWTSIRNVMDMKSIYGGLAVALSQQKVWVMNVVPVHAPDTLPIIFERGLVGMYHDWCESFGTYPRTYDLLHADHLFSRLKNRCKQPVSIVVEMDRITRPGGWTIIRDKVEILNPLEEILKSMQWEIRMTFAQDKEGILCAQKTFWRPIPLLHIFSHKSSFSTATMSISNSLSSVPARLTLLALFSATTFYCLYKSRRLRYLKLSLNPNPKPKPKIIFLSETGTSKTLALRLHRLLASNGVAFDVVDSRHYEPEDLPKETLLXLVASTWQDGAPPDASRFFATWLAEASADFRAGSLLLSSCRVAVFGVGSRAYGESFNAVAKGLATHLRALGAKEVVPLCEGDVDGGDLDKVFDRWCEKVLAVLKGGGVXECDDGDGGGALDYGVYSSSEEESDVESEIVDLEDIAGKAPSRRKTLASGEESNGKLSGRKEMVTPVIRANLVKQGYKIIGSHSGVKICRWTKAQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWEMDDPVEIVNSAVDLHTNMVKQMKGVPGVTLERLNEGLSPRHCALSLVGEPIMYPEINALVDELHKRRISTFLVTNAQFPEKIKSLKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFIDSLTALREKHQRTVYRLTLVKGWNTEDVDAYSKLFSIGDPDFVEIKGVTYCGTSTTSKITMENVPWHADVKAFSEALALKSQGEYEVACEHAHSCCVLLAKTNKFKIDGRWYTWIDYEKFHDLVASGKTFDSRDYMTATPSWAIYGSKEGGFDPGQLRYKKERHHKSSHNQSG* 1378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1942 1377 SUPERFAMILY Radical SAM enzymes 1060 1240 - -
Vra6g1942 1377 MobiDBLite consensus disorder prediction 155 173 - -
Vra6g1942 1377 PANTHER METHYLTRANSFERASE PMT28-RELATED 8 717 - -
Vra6g1942 1377 MobiDBLite consensus disorder prediction 65 82 - -
Vra6g1942 1377 SUPERFAMILY Flavoproteins 782 934 IPR029039 -
Vra6g1942 1377 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 250 442 IPR029063 -
Vra6g1942 1377 MobiDBLite consensus disorder prediction 48 188 - -
Vra6g1942 1377 MobiDBLite consensus disorder prediction 1355 1377 - -
Vra6g1942 1377 Coils Coil 136 163 - -
Vra6g1942 1377 Gene3D - 758 938 IPR029039 -
Vra6g1942 1377 PRINTS Flavodoxin signature 784 797 IPR001094 GO:0010181
Vra6g1942 1377 PRINTS Flavodoxin signature 832 843 IPR001094 GO:0010181
Vra6g1942 1377 PRINTS Flavodoxin signature 870 880 IPR001094 GO:0010181
Vra6g1942 1377 PRINTS Flavodoxin signature 895 914 IPR001094 GO:0010181
Vra6g1942 1377 MobiDBLite consensus disorder prediction 48 64 - -
Vra6g1942 1377 ProSiteProfiles Radical SAM core domain profile. 1047 1290 IPR007197 GO:0003824|GO:0051536
Vra6g1942 1377 SFLD tRNA wybutosine-synthesizing 998 1309 IPR034556 GO:0008033|GO:0051539
Vra6g1942 1377 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 224 712 IPR004159 GO:0008168
Vra6g1942 1377 SFLD Radical SAM 998 1309 IPR007197 GO:0003824|GO:0051536
Vra6g1942 1377 Pfam Flavodoxin 785 926 IPR008254 GO:0010181
Vra6g1942 1377 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 8 717 IPR004159 GO:0008168
Vra6g1942 1377 Pfam Radical SAM superfamily 1059 1237 IPR007197 GO:0003824|GO:0051536
Vra6g1942 1377 MobiDBLite consensus disorder prediction 97 154 - -
Vra6g1942 1377 ProSiteProfiles Flavodoxin-like domain profile. 783 931 IPR008254 GO:0010181
Vra6g1942 1377 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 520 697 IPR029063 -
Vra6g1942 1377 Pfam Wyosine base formation 1242 1305 IPR013917 -
Vra6g1942 1377 Gene3D Aldolase class I 988 1317 IPR013785 -
Vra6g1942 1377 CDD Radical_SAM 1059 1235 - -
Vra6g1942 1377 MobiDBLite consensus disorder prediction 174 188 - -
Vra6g1942 1377 Gene3D Vaccinia Virus protein VP39 310 485 IPR029063 -
Vra6g1942 1377 CDD AdoMet_MTases 340 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1942 Vra-Chr6 36040386 36052509 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1942 6 36040386 36052509 Vra6g1942 6 36040386 36052509 ECH