Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1922 ATGGAGTCCATGGTTCGGTGCTATAGTTCTTCTTACGCGTTATTTGGATTTCGTTGCAACTTTCGATTCGCCGTTGTTGTTTTCGAGATTGTATTGATATTGGCATGGTTGGAAGTCTATAATGCAAAGCTCCCAGAACACCGATTTCATGGGGGAGGTTTGGAAGGGAGGAGTGGGAACATTGCCTCACACTCTTGCATACATGACGAGATACTTGAACAGAGAAAACGACCTGGTCGAAAGGTGTATTCCGTTACCCCACAGGTTTACAAACCTGGTCTTTCGAAACACCTCCAGCTTAAAGGTAGAGCGTTGCTTGGTATATCAACATCATCAGAGCTTCTAGAGATTGAAAAGCAACCTATTAGGATATATCTAAATTATGATGCAGTTGGTCACTCCCCTGACAGGGATTGCCAAAAGATTGGTGATATTGTCAAGCTTGGGGAGCCTCCCATAACTTCTCTTTCTGGTTTGCCTTCGTGTAATCCTCTTGCTGATCCTCCTGTCTTTGGCGATTGTTGGTATAACTGCACTTCTGAAGATATCTCAGGAGAGGACAAAAAACATCGCCTTCGTAAGGCATTAGGTCAGACAGCTGACTGGTTTAGAAGGGTATTGTCTGTGGAGCCTGTGAAGGGGAACTTGCGATTAAGTGGATACTCTGCATGTGGTCAAGATGGAGGTGTGCAGCTCCCTCATGCATATATTGAAGAGGGAGTTTCTGATGCCGACTTGGTTCTCTTGGTGACTACAAGACCTACTACCGGGAATACACTTGCTTGGGCTGTGGCATGTGAACGGGACCAATGGGGTCGTGCTATAGCTGGACATGTTAATGTTGCTCCACGTCATTTGACAGCTGAGGCAGAGACTTTGCTATCAGCTACTTTGATACACGAGGTTATGCATGTTCTTGGTTTCGATCCACATGCCTTTACTCATTTTAGAGATGAAAGGAAAAGACGCCTTGACAAGGTTACTGAACAAGTTATGGATGAAAAGATTGGGCGGATGGTAACACGAGTGGTTCTTCCACGTGTTGTCATGCATTCCCGGCATCATTATGCGGCATTTTCAGGAAATTTTACTGGCTTAGAGCTGGAAGATGGTGGAGGACGTGGCACATCAGGGTCTCACTGGGAAAAGAGGCTTCTGATGAATGAGATCATGACTGGTTCTGTGGATACAAGATCTGTAGTTTCAAAAATGACACTAGCTCTATTAGAAGACAGTGGATGGTACAAAGCCAATTATAGCATGGCAGATCAACTTGATTGGGGTCGGAACCAGGGTACTGAATTTGTTACCTCCCCTTGCAATCTGTGGAAAGGGGCCTATCGTTGCAACACAACACAATTCTCAGGTTGTACGTATAACAGAGAGGCGGAGGGTTACTGCCCAATTCTAACCTACAGCGGAGATCTTCCTCAGTGGGCTCGGTATTTTCCTCAAGCTAATAAAGGTGGACAATCCTCATTGGCTGATTATTGCACTTATTTTGTTGCATACTCTGATGGATCATGTACAGACACTAGCAGTGCACGAGCACCTGATAGCATGCTAGGTGAAGTTCGAGGAAGTAACTCCAGGTGTATGGCATCATCCTTGGTGCGCACAGGATTTGTACGGGGTTCTCTGACCCAGGGAAATGGCTGTTATCAGCACAGGTGTATCAACAATTTTCTAGAGGTTGCTGTGGATAGTGTCTGGAAAGTGTGTCCTCAGGCTGGTGGACCCATTCAGTTCCCTGGCTTTAATGGTGAATTAATCTGCCCTGCATATCATGAGCTCTGTAACACGGATCCAGTGGTTGTGTCTGGGGAATGTCCCAGTGCATGTAATTTCAATGGAGATTGTGTTGATGGAAGGTGTCACTGCTTTCTTGGGTTTCATGGTCATGATTGCAGTAGACGTTACTGTCCTAGCAATTGCACTGGCAAGGGGGTGTGTCTCACCAGTGGAATATGTGAATGTAAAACTGGCTATACTGGCATTGACTGTTCCACTGCTGTTTGTGATGAGCAGTGCAGTCTTCATGGTGGAGTTTGTGATAATGGAGTTTGTGAATTCCGTTGTTCTGACTATGCGGGATATACTTGCCAGAACAGCTCCAGGCTCCTCTCCAGTCTTTCAATTTGCAGAAATGTGCTGGGAAATGATATTTCCGGACAACATTGTGCACCCAGTGAACCTAGCATACTTCAGCAGCTAGAAGAAGTGGTTGTGATGCCCAACTACCATAGATTATTCCCTGGTGGTGCTAGGAAACTATTTAATATATTTGGCAGTACGTACTGTGATGAGGCAGCCAAAAGGCTTGCCTGCTGGATCTCAATCCAAAAGTGTGAGAAGGATGGAGACAACAGGCTACGAGTATGTCATTCTGCTTGTCAGGCTTATAATCTAGCATGTGGAGCTTCACTGGACTGCGGTGACCAAACCCTTTTCAGCAGCGAGGGGGAGGGGGAGGGTCAGTGCACTGGCTCTGGTGAGATGAAATTGTCATGGTTTAATCGGCTAAGAAATAGTTTTTCTTTGAGAAATAGTTCCTCAAAAGTGATATCTATAATAAGATATAGGCAGCTTTAG 2592 0.4549 MESMVRCYSSSYALFGFRCNFRFAVVVFEIVLILAWLEVYNAKLPEHRFHGGGLEGRSGNIASHSCIHDEILEQRKRPGRKVYSVTPQVYKPGLSKHLQLKGRALLGISTSSELLEIEKQPIRIYLNYDAVGHSPDRDCQKIGDIVKLGEPPITSLSGLPSCNPLADPPVFGDCWYNCTSEDISGEDKKHRLRKALGQTADWFRRVLSVEPVKGNLRLSGYSACGQDGGVQLPHAYIEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFTHFRDERKRRLDKVTEQVMDEKIGRMVTRVVLPRVVMHSRHHYAAFSGNFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYSMADQLDWGRNQGTEFVTSPCNLWKGAYRCNTTQFSGCTYNREAEGYCPILTYSGDLPQWARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTSSARAPDSMLGEVRGSNSRCMASSLVRTGFVRGSLTQGNGCYQHRCINNFLEVAVDSVWKVCPQAGGPIQFPGFNGELICPAYHELCNTDPVVVSGECPSACNFNGDCVDGRCHCFLGFHGHDCSRRYCPSNCTGKGVCLTSGICECKTGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSRLLSSLSICRNVLGNDISGQHCAPSEPSILQQLEEVVVMPNYHRLFPGGARKLFNIFGSTYCDEAAKRLACWISIQKCEKDGDNRLRVCHSACQAYNLACGASLDCGDQTLFSSEGEGEGQCTGSGEMKLSWFNRLRNSFSLRNSSSKVISIIRYRQL* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1922 863 Gene3D - 598 640 - -
Vra6g1922 863 Gene3D Leishmanolysin , domain 2 314 440 - -
Vra6g1922 863 Gene3D Leishmanolysin domain 4 504 597 - -
Vra6g1922 863 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 1 834 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vra6g1922 863 Gene3D - 116 305 - -
Vra6g1922 863 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 120 603 - -
Vra6g1922 863 Pfam EGF-like domain 641 668 IPR013111 -
Vra6g1922 863 Pfam Leishmanolysin 176 601 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vra6g1922 863 Gene3D Laminin 641 671 - -
Vra6g1922 863 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 1 834 - -
Vra6g1922 863 SMART egf_5 640 669 IPR000742 -
Vra6g1922 863 SMART egf_5 609 637 IPR000742 -
Vra6g1922 863 ProSitePatterns EGF-like domain signature 2. 657 668 IPR000742 -
Vra6g1922 863 Gene3D Leishmanolysin domain 3 443 502 - -
Vra6g1922 863 ProSiteProfiles EGF-like domain profile. 637 669 IPR000742 -
Vra6g1922 863 ProSitePatterns EGF-like domain signature 1. 657 668 IPR000742 -
Vra6g1922 863 PRINTS Leishmanolysin (M8) metalloprotease family signature 250 279 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vra6g1922 863 PRINTS Leishmanolysin (M8) metalloprotease family signature 403 432 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1922 Vra-Chr6 35828510 35836702 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1922 6 35828510 35836702 Vra6g1922 6 35828510 35836702 ECH