Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1921 ATGAAAAACTCAAAACCTTTTGCACTTACCCACTTCCTCCTCTTCTTATTAGGTAATGTAGCATCTGCCACAGTGTTCACCCTCCAAAACCGTTGCAGTTACACAGTTTGGCCGGGGACACTTTCCGGCAACGGCGTAGCCACTCTCGGCGACGGCGGTTTCCCCCTGGAGCCGGGTGCGGAGGTTCAGCTCACTGCACCATCTGGCTGGTCCGGCCGGTTATGGGCCAGGACTGGCTGTAGCTTCGACGGATCCGGCATCGGAACATGCGCCACCGGAGACTGCGCCGGTGGACTGCGGTGCACCGGGGGAGGCGTTCCACCGGCCACTCTGGCAGAGTTCACCATCGGATTCGCCGGTAACGGCGACAAGGACTTCTACGACGTGAGTCTTGTGGACGGTTACAATGTAGGCATCGGCGTGCGGGCTACCGGAGGAACCGGTGACTGCCAGTACGCAGGGTGCTCGGCGGACTTGAACGCAGTGTGTCCGGAGGAATTGCAAGTGAGAGACGGCGGCGGCGCGGTGGTTGCGTGCAAAAGCGCTTGCGCCGCGTTTAACACGTCGGTGTTTTGCTGCACTGGCGAGCACGGAACGCCACAAACGTGTTCGGCGACACATTATTCGGAGATTTTCAAGAATGCGTGTCCAACAGCGTACAGTTACGCTTACGATGATGCTTCCAGCACTCGCACCTGTTCTGGATCTGATTATCTTATCGCCTTTTGCCCTTAA 735 0.5782 MKNSKPFALTHFLLFLLGNVASATVFTLQNRCSYTVWPGTLSGNGVATLGDGGFPLEPGAEVQLTAPSGWSGRLWARTGCSFDGSGIGTCATGDCAGGLRCTGGGVPPATLAEFTIGFAGNGDKDFYDVSLVDGYNVGIGVRATGGTGDCQYAGCSADLNAVCPEELQVRDGGGAVVACKSACAAFNTSVFCCTGEHGTPQTCSATHYSEIFKNACPTAYSYAYDDASSTRTCSGSDYLIAFCP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1921 244 SUPERFAMILY Osmotin, thaumatin-like protein 25 244 IPR037176 -
Vra6g1921 244 CDD TLP-PA 25 243 - -
Vra6g1921 244 Pfam Thaumatin family 30 244 IPR001938 -
Vra6g1921 244 ProSitePatterns Thaumatin family signature. 86 101 IPR017949 -
Vra6g1921 244 PIRSF PR5 2 244 IPR001938 -
Vra6g1921 244 Gene3D Thaumatin 24 244 IPR037176 -
Vra6g1921 244 PANTHER OS03G0233200 PROTEIN 12 244 IPR001938 -
Vra6g1921 244 SMART tha2 26 244 IPR001938 -
Vra6g1921 244 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Vra6g1921 244 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Vra6g1921 244 PRINTS Pathogenesis-related protein signature 86 115 IPR001938 -
Vra6g1921 244 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Vra6g1921 244 ProSiteProfiles Thaumatin family profile. 23 244 IPR001938 -
Vra6g1921 244 PANTHER PATHOGENESIS-RELATED PROTEIN 5-RELATED 12 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1921 Vra-Chr6 35825309 35826582 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1921 6 35825309 35826582 Vra6g1921 6 35825309 35826582 ECH