Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1916 ATGGGTTGGCTTAGCAGAATTTTCAAAGGGTCTGAGCAGAAGATTTCGGAGGGGCATTATAGTAAAGAGGATGCTGGTTATTATTTGCCATCGACTTCGGGGGTAACAACAAATGATGTTTGGAACCAGAACGAGAATGAGGATATAGATCGTGCTATTGCACTGTCGCTGGTGGAAGAGAGCGAGCGAACACACAATGTAAATGACAACAGATCACAATTAGAAGAAGATGAACAACTTGCCAGAGCTTTAGAAGAAAGTCTAAACGTGGAGTCTCCTCCCAGATATGGAAATGAAAATGCGTATCAACCAATTCAGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGCTGCTATACTGAGATTGGTTATGGTCGATATCTTAATTGCTTGAACGCATTCTGGCATCCTGAATGCTTCCGCTGCCGAGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGTTATAAGGAAAGCTACCACCCGAAATGTGATGTCTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTCCAGAAATATTGCCCTTCTCATGAACATGACTGTACTCCACGATGTTGCAGTTGTGAGCGAATGGAGTCGCATGAGGCAGGATATATTGCGCTTAAGGATGGCCGGAAGCTCTGTTTAGAGTGTCTGGATTCTGCTATCATGGATACAAATGAATGCCAACCCCTTTATGCTGATATACAAAAATTTTATGAAAGCCTAAATATGAAACTGGATCAGCAAATTCCACTACTATTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGATAAGAATGGACATTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTTTCTCAAGACGACCAAGATTTGGGGCAGGAAATGGAGCAATGGACATAAGAGCACAGCCATACAGGATGGCTCCACATTGTGATGTGACAGCTATTCTCATTTTATATGGTCTTCCAAGATTGCTCACTGGATCGATCCTAGCCCATGAGATGATGCATGCCTGGCTTCGACTAAAAGGTTATCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAACTAAGCTCTGCATCAGGCAGCAACTTTGTATCAGCTTCATCCTCATCTGCATCACACACATCTAAAAAGGGTAAAAGACCTCAGTTTGAGAGGAAGCTAGGGGAGTTCTTCAAACACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAATATGGTCTACAAAGGACCCTTCACCACATCAGGATGACGGGGACTTTTCCATATTAA 1428 0.437 MGWLSRIFKGSEQKISEGHYSKEDAGYYLPSTSGVTTNDVWNQNENEDIDRAIALSLVEESERTHNVNDNRSQLEEDEQLARALEESLNVESPPRYGNENAYQPIQYFPMGSRICAGCYTEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDCTPRCCSCERMESHEAGYIALKDGRKLCLECLDSAIMDTNECQPLYADIQKFYESLNMKLDQQIPLLLVERQALNEAREGDKNGHYHMPETRGLCLSEELSTFSRRPRFGAGNGAMDIRAQPYRMAPHCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELSSASGSNFVSASSSSASHTSKKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIRMTGTFPY* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1916 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 196 - -
Vra6g1916 475 PANTHER PROTEIN DA1-RELATED 2 1 475 IPR045218 -
Vra6g1916 475 Coils Coil 67 87 - -
Vra6g1916 475 PANTHER PROTEIN DA1-LIKE 1 475 - -
Vra6g1916 475 CDD LIM_DA1 115 167 - -
Vra6g1916 475 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Vra6g1916 475 Gene3D Cysteine Rich Protein 110 174 - -
Vra6g1916 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 44 63 IPR003903 -
Vra6g1916 475 Pfam Protein DA1 265 470 IPR022087 -
Vra6g1916 475 Pfam LIM domain 115 169 IPR001781 -
Vra6g1916 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 75 94 IPR003903 -
Vra6g1916 475 SMART uim 75 94 IPR003903 -
Vra6g1916 475 SMART uim 44 63 IPR003903 -
Vra6g1916 475 SMART lim_4 114 166 IPR001781 -
Vra6g1916 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 108 140 - -
Vra6g1916 475 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1916 Vra-Chr6 35769143 35776092 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra6g1916 DA1-like 9.2e-95 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1916 6 35769143 35776092 Vra6g1916 6 35769143 35776092 ECH