Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1908 ATGGCGAAATCGAGCGCCGATGACGGCGACCTCCGGCGAGCTTGCGAAGCCGCAATTGAGGATACCAAGCAGAAGATCGTGATGGCGCTTCGGGTCGCCAAGGGTCACGGCATCTTAGGAAAATCGTCCAAGCTCGGTCGCCAAATGGCCAAGCCTAGGGTTCTCGCTCTCTCCACAAAATCGAAGGGTCAGAGGACATCGGCTTTTCTTCGCGTATTGAAGTATTCTACGGGAGGAGTTCTTGAACCTGCAAAGCTATACAAGCTGAAGCATCTGTCAAAAGTGGAAGTTGTAGCAAATGATCCCAGTGGATGTACATTTACTCTGGGATTTGATAACCTTAGAAGCCAGAGTGTGGCTCCTCCTCAATGGACCATGCGCAATATTGATGACAGGAATCGCCTTCTTCTTTGCATCTTGAACATATGCAAAGATGTTTTGGGTCGCCTTCCGAAGGTTGTCGGTATAGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACACCCTCTGTTCCTGCTCAGAATAAAGTACGAGATGGTGGTCCTGTTGCATCATCTGTTGTGAGGGAGACAGAATTAAAAGTTAATGTTGAAAAGGAACTTGTCTCCCAGGCAGAGGAAGAGGACATGGAAGCTCTTTTGGGAACTTATGTGATGGGTATAGGTGAAGCAGAAGAATTTTCTGAAAGGTTGAAGAGGGAGCTCCAGGCTCTCGAAGCAGCAAATGTGCATTCTCTTTTAGAAAGTGAACCTTTGATGGATGAGGTTATGCAAGGGCTTGAAGCAGCAACCAGTGTTGTGGAAGATATGGATGAATGGTTAAGCATATTCAATGTAAAACTCCGGCACATGAGGGAGGATATTGCATCAATAGAAACGCGCAATAACAATCTGGAAATGCAATCAGTTAATAACAAATCTCTCATTGAAGAGCTTGATAAGCTTCTTGAGCGGTTGCGTGTCCCTTCTGAGTATGCTGCAAGTTTGACAGGAGGTTCATTTGATGAAGCTCGAATGCTTNAAAATGTTGAGGCATGTGAATGGTTGACTAGTGCCTTGCGTGGCCTTGAAGCACCTAATATAGACCGTAGTTATGCAAACATGAGAGCTGTTAAAGAAAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCATCTGAATTCTTGAGNAATTATTTTGCTAGCTTGGTGGACTTCATGATAAGCGATAAAAGATACTTTTCCCAGCGAGGACAGTTAANGAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGGACATATGCACGTCTTCTGCAACATTTGAAGAGTCTTGACAAGAATTGCTTGGGTGTGCTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGTAGGGAGGCCCGTGAGTTTGCAAATGAGCTTCGTGCTAGTACTAAAGCATCTAGAAATCCAACTGTTTGGCTCGAAAGTTCTTCAGGTTCTGGTCAAAATGTAAATGCTACAGACACTTCCACAGTTTCTGATGCTTATGCGAAGATGCTTACAATTTTTATTCCACTTCTAGTGGATGAGAGTTCGTTTTTTGCACACTTCATGTGCTTTGAAGTCCCTACACTCGTTCCTCCTGGAGGTGTTAATGGAAACAAAACTGGATATGATGATGATGATGATGATTTGGGAATTATGGACATTGATGAGAATGACAGCAAATCTGGTAAAACTTCTGCGGAGCTTGAAGCTTTGAATAAATCACTTAAGGATTTACTTGATGGAATACAAGAAGACTTTTATGCTGTTGTGGATTGGGCATACAAGATTGATCCTCTANGCTGTATATCAATGCATGGAATAACAGAGCGCTATCTATCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGTGATTTACTTCGTGACCTGGAGTCTCGGATATCTATGCAGTTCAACCGTTTTGTTGATGAAGCTTGCCATCAAATTGAAAGAAATGAAAAGAATGTTCGCTCGACGGGTGTCCTCTCATATATTCCCAGATTTGCAACCCTTGCAACTCGGATGGAGCAGTACATCCAGGGTCCGTCTAGGGATTTGGTTGACCAAGCATATACAAAATTTGTTAGCATAATGTTTGCTACTTTAGAAAAAATTGCTCAGACAGAACCAAAGAATGCAGATATTTTTCTTTTTGAGAACTATGCTGCCTTTCAGAATAGTTTGTATGACCTCGCCAACATTGTGCCCACTTTGGCCAAATTTTATCATCAGGCCAGTGAAGCCTATGAACAAGCTTGTACACGTCATATTAGCATGATAATATACTATCAATTTGAACGCCTTTTCCAGTTTGCTCGAAGGATTGAGGACTTGATGTTCACTGTTCCACCTGAAGAGATTCCTTTTCAGCTTGGACTGTCAAAAATGGATCTTCGAAAGATGTTAAAATCCAGTTTATCTGGGGTGGACAAGTCCATTGCTACGATGTATAAGAAACTGCAAAAGAACTTGACTTCAGAGGAACTATTACCCTCTTTATGGGACAAATGCAAGAAGGAGTTTCTTGATAAGTACGAAAGTTTTGCCCAACTTGTGGCTAGGATTTACCCTACGGAGACAATACCATCTGTTGCAGAGATGAGAGACCTTTTAGCTTCCATGTAG 2655 0.4256 MAKSSADDGDLRRACEAAIEDTKQKIVMALRVAKGHGILGKSSKLGRQMAKPRVLALSTKSKGQRTSAFLRVLKYSTGGVLEPAKLYKLKHLSKVEVVANDPSGCTFTLGFDNLRSQSVAPPQWTMRNIDDRNRLLLCILNICKDVLGRLPKVVGIDVVEMALWAKENTPSVPAQNKVRDGGPVASSVVRETELKVNVEKELVSQAEEEDMEALLGTYVMGIGEAEEFSERLKRELQALEAANVHSLLESEPLMDEVMQGLEAATSVVEDMDEWLSIFNVKLRHMREDIASIETRNNNLEMQSVNNKSLIEELDKLLERLRVPSEYAASLTGGSFDEARMLXNVEACEWLTSALRGLEAPNIDRSYANMRAVKEKRAELEKLKSTFVRRASEFLXNYFASLVDFMISDKRYFSQRGQLXRPDHADLRYKCRTYARLLQHLKSLDKNCLGVLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLESSSGSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGVNGNKTGYDDDDDDLGIMDIDENDSKSGKTSAELEALNKSLKDLLDGIQEDFYAVVDWAYKIDPLXCISMHGITERYLSGQKADAAGFVRDLLRDLESRISMQFNRFVDEACHQIERNEKNVRSTGVLSYIPRFATLATRMEQYIQGPSRDLVDQAYTKFVSIMFATLEKIAQTEPKNADIFLFENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFARRIEDLMFTVPPEEIPFQLGLSKMDLRKMLKSSLSGVDKSIATMYKKLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVARIYPTETIPSVAEMRDLLASM* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1908 884 Coils Coil 282 319 - -
Vra6g1908 884 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Vra6g1908 884 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 884 - -
Vra6g1908 884 PANTHER SEC3/SYNTAXIN-RELATED 1 884 - -
Vra6g1908 884 Coils Coil 575 595 - -
Vra6g1908 884 Coils Coil 189 209 - -
Vra6g1908 884 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Vra6g1908 884 Coils Coil 362 382 - -
Vra6g1908 884 Pfam Exocyst complex component Sec3 577 867 IPR019160 GO:0000145|GO:0006887
Vra6g1908 884 Pfam Exocyst complex component Sec3 225 493 IPR019160 GO:0000145|GO:0006887
Vra6g1908 884 Coils Coil 222 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1908 Vra-Chr6 35693814 35710586 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1908 6 35693814 35710586 Vra6g1908 6 35693814 35710586 ECH