Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1905 ATGCTAAGAGAGGAAACGGTGGGTTCCAGAAGTGCCAGGCACACCGCCGCCTCCGCCACTGCCACTGTCTCCAACAAGGTTCTCGTCGCCGTCAAGGCGGAGAAGGTGATCTCCAACACCGCATTAGCCTGGGCTCTCACTCATGTCGTTCACTCCAGCGACTCCATCACACTCCTCGCCGTTTACTCTGCTCAAAAAACCGGCAGAAGATTCTGGCATTTTTCGAGAATTGCTGGAGACTGTACGACCGGACCGGCGGCGAAGTTGCCGGAGCGAATTTCAGATATCTCCGAGTCTTGTGCGCAGATGGTGCTTCAGTTGCACAATCAAGTTGAGGTAAGGGTAAAGATTAAGGTGGTTACGGGTACTCCCAGTGGTGCTGTGGCGGCCGAGGCTAGATGGAGCGGTTCCCATTGGGTCATACTGGACAAGAAATTAAAGCAAGAGGTAAATCATTGCATGGATGAACTCAACTGTAGCATTGTGGTGATGAATGGGTCACAGGCAAAAATCCTCAGACTTAACTTAGGGTGTTCCGACGAACTCCAAACTCCTTTTTTCTCGGCTACTTCTTCACCAGGCATAGAAATTGCAAAGCTAAAAGGCGGAAGATTGATGCATTCTACCCCAGTAGGTAGCCCTGAAGAAGCAGGTACTTCTGTTATAAGAAATATAGGAGTAAATTCAGGGTCAAGTTCGGACTCGATGACTTCTCCTTTCCTTGTCTATGAACAAAATCCTTTGTACGAGGGTCAGGGCCCAGGAAAAAACATACACAAAGCAATCAACGAACAGATAGATTTCAATGTCCAGCCACCATTATACTTTGACATTGAAAGAGATCGCCCTCCCCCGCTCTGGCCGCGTCCAACACCATCTGTGGCTAGTGAAAACAAGCCTGTATTTTGGATTCCTCAAAACCACATTGTAGACGACAAGTTTCCGAAAACTAAAAACAACATCCAAAGAACTAAATCTCCATCTTCGAAAACTTTACTTGAGAATTTTAAGCGTTGTGATAAAGAGATGAGAAGAAATGAATACGGGTTTGACCAAGCTCAAAGTAGAAGATACGAGACGGGCAACAGAGATAATTCCATACCTTTGGGCAGAACTACCTCAATACCTCCTCCCTTGTGCTCACAGTGTCAGAATAAAGCACCAGTATTTGGAAAGCCTCCAAAACGGTTTTCTTACAAAGAGCTAGAGGAAGCTACTGATATGTTCTCAGATGTGAATTTTTTGGCTGAAGGTGGATTCGGTGTGGTCCACAAGGGAATACTCAAAGATGGCCAGGTTGTTGCGGTGAAACAGTTAAAGTGTGGGGGTTCTCAAGCAGATCTTGACTTCTGCAGGGAAGTTCGGGTTTTGAGCTGTGCACAACACAGAAATGTTGTGCTGTTGATAGGGTTTTGTACAGAGAGCAATTTGAGGATATTAGTTTATGAGTACATATGCAACGGATCCTTAGACCTCTACTTATATGGACATGATAGTATGCCTCTGGATTGGAACTCACGCTTAAAGATTGCAATTGGAACTGCACGAGGCTTGCGCTACCTTCATGAAGACTGTAGAGTTGGTTGTATAGTGCACAGAGACCTTCGACCTAAAAATATCCTCTTAACCCATGACTTTGAACCTCTGGTGGCGGACTTTGGGCTTGCTAGATGGTACTCAGAATTGAATATAGATACAGAAGATCGAGTTCTAGGAACTTCAGGGTATCTTGCACCGGAGTATCTTGACGCTGGAAATCTTACATATAAAGTAGATGTATATGCATTTGGAATTGTATTATTAGAGTTAATAACAGGTAGAAGAATTAGCGAGTTAGAACAGTTCAATGGATTCTCGTATCTTCCCGAATGGATTCACCCTCTACGCATGTTAGAGCCCAGTCATATCTTACAAAACGTTAGTTCTCCCAAACCATTGGAATTTAATCTTCAATTGCAAGCTATGGCTCGAGCTGCTTCGTTGTGTCTCCGTGTGGATCCTGATGCCAGACCCCCAATGTCAAAGATCCTGCGAGTGCTGGAAGGGGGTGATCCAGTTCGTCCTATGGGTTTAGACATCAACTCAATTGGTAACACAAGTGGGCATTTAAGCGGTTTGAAGTCGCTCAATCCACCAGAAGCTACGATAATTCATTCTCGTACACTATCACATTGA 2175 0.4501 MLREETVGSRSARHTAASATATVSNKVLVAVKAEKVISNTALAWALTHVVHSSDSITLLAVYSAQKTGRRFWHFSRIAGDCTTGPAAKLPERISDISESCAQMVLQLHNQVEVRVKIKVVTGTPSGAVAAEARWSGSHWVILDKKLKQEVNHCMDELNCSIVVMNGSQAKILRLNLGCSDELQTPFFSATSSPGIEIAKLKGGRLMHSTPVGSPEEAGTSVIRNIGVNSGSSSDSMTSPFLVYEQNPLYEGQGPGKNIHKAINEQIDFNVQPPLYFDIERDRPPPLWPRPTPSVASENKPVFWIPQNHIVDDKFPKTKNNIQRTKSPSSKTLLENFKRCDKEMRRNEYGFDQAQSRRYETGNRDNSIPLGRTTSIPPPLCSQCQNKAPVFGKPPKRFSYKELEEATDMFSDVNFLAEGGFGVVHKGILKDGQVVAVKQLKCGGSQADLDFCREVRVLSCAQHRNVVLLIGFCTESNLRILVYEYICNGSLDLYLYGHDSMPLDWNSRLKIAIGTARGLRYLHEDCRVGCIVHRDLRPKNILLTHDFEPLVADFGLARWYSELNIDTEDRVLGTSGYLAPEYLDAGNLTYKVDVYAFGIVLLELITGRRISELEQFNGFSYLPEWIHPLRMLEPSHILQNVSSPKPLEFNLQLQAMARAASLCLRVDPDARPPMSKILRVLEGGDPVRPMGLDINSIGNTSGHLSGLKSLNPPEATIIHSRTLSH* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1905 724 SMART tyrkin_6 409 680 IPR020635 GO:0004713|GO:0006468
Vra6g1905 724 Gene3D HUPs 10 177 IPR014729 -
Vra6g1905 724 Gene3D Transferase(Phosphotransferase) domain 1 485 685 - -
Vra6g1905 724 ProSiteProfiles Protein kinase domain profile. 409 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1905 724 ProSitePatterns Tyrosine protein kinases specific active-site signature. 530 542 IPR008266 GO:0004672|GO:0006468
Vra6g1905 724 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 21 712 - -
Vra6g1905 724 Pfam Protein tyrosine and serine/threonine kinase 415 679 IPR001245 GO:0004672|GO:0006468
Vra6g1905 724 SUPERFAMILY Protein kinase-like (PK-like) 388 681 IPR011009 -
Vra6g1905 724 Gene3D Phosphorylase Kinase; domain 1 378 484 - -
Vra6g1905 724 PANTHER OS01G0253100 PROTEIN 21 712 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1905 Vra-Chr6 35655391 35662001 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vra6g1905 PK_Tyr_Ser-Thr 3.8e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1905 6 35655391 35662001 Vra6g1905 6 35655391 35662001 ECH