Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1901 ATGGGGTGTGACTGTGGGGGGAAGTTAAGTTTGAGAAAGCCTCATTTTTATGAGGTTTATTCCTCTGCCTTCAGTTCTCACAGACTGAAAATTCCAGATGGATTTGTGTGTCGCATGGAGGGAAGGACGTATGGGTCATTTTCATTGACTGGTCCCAGTGGAAACGTATGGAAAGTGCAATTACTTAAGCAGGACAATGATCTATTCTTCCATCATGGATGGTCGTCATTTGTGATGGATCATCGTCTAGAATGTGGTGACCTTTTGGTTTTCAGATACGATGGTCACTTGCATTTTACCGTTCAAGTATTTGATAAGGATGCGTGTGAGAAAGAGGCAGCATTTATGTCTGAATGTAGTCAAAGTTCGAGTGACTTTGAGGAAATTGTTGGACAGAAAAGAGATGTGAAGGAGAGTTGTTCTTTGGATATTGCATTTGATGGTGTTGCAAAGAAAAGGAGAGGTTGTAAATATGAGAACCGGGAAATTGAACCAGGGTTTGTTGGTAAAGAACTATTGCGATATGAGGTAGTAAGACCGATTAGAATGTTCAGAGAAACTGAAGAAACCTCGAAAGCTTGTTTGGCTAATGATAGCCTTGTGCCTTTTCACATGGACAATCGAAATGAAGAGGCTGCCATCCTGTACAGAAGTGGAAAGGAAGATGGTCATTATTTTCTTGGTGGAGTTTCATTATCTAATGTATCAGCACAAGATGAGAAAAAAGTTGCTCAGTCTTTTACTTCCAAATTTCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCATATCAGTTTTCCATGGCACACCTTCCCAATTGCAAGATAAAAATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACACTTTGTGGAGGATGGATGGCTTTCGTTCGTGGTAATAACATTAAGATTGGAGATATCTGTATTTTTGAGCTTGTGAACGAGTGTGAATTACGTGTTCACATTGCTGGGATTGGAAAAGATGGTCTAGAAGACGACCAGGTTGGAAGAGTGAATGCAGGGCATGCTGGAACTACCAGATATATGCCAATGAATGCTAAAGTAAACTCAAAGTCCATAAGAAAAGTTGATCTATCAGATAAAAAATGGCCCAAGATTGGTCAAGAAACTGTTTTATCCATTGACCTTAAGAAATCTGGTAGAGCTTCAAATACTTCTAAGAAGATGGGCCTTTGCCCTCAGTCCAAAGCTGCCCATAAAAAGTTGGCTACTCCGAGGAGACATCGAGTTGAAGATGAGCTAAGCTCACAGGCTAAATCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTAGCTCAAGCTTTTAGTTCCCCTTTTCCCAGTTTTGTTAAAATCATGAAAATGTTCAATGTCAGTGGCTCGTACACTTTGAAAATCCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTTATACTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCCGAACAGTTCACACCTTTTGTGGGGGTTGGATGGCATTTGTTCGTGACAATGACATAAATTTTGGAGACACATGCATTTTTGAACTGGTTACTCAATGTGAGATGCAGGTCTACATATCTGGGGTCGGAAAGGAAGGGCCTGACCATCAAAATGCCCACTTAAAACTTGACAGATTATCTATCCTTCCATCTACCTGCTAA 1785 0.4022 MGCDCGGKLSLRKPHFYEVYSSAFSSHRLKIPDGFVCRMEGRTYGSFSLTGPSGNVWKVQLLKQDNDLFFHHGWSSFVMDHRLECGDLLVFRYDGHLHFTVQVFDKDACEKEAAFMSECSQSSSDFEEIVGQKRDVKESCSLDIAFDGVAKKRRGCKYENREIEPGFVGKELLRYEVVRPIRMFRETEETSKACLANDSLVPFHMDNRNEEAAILYRSGKEDGHYFLGGVSLSNVSAQDEKKVAQSFTSKFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKIGDICIFELVNECELRVHIAGIGKDGLEDDQVGRVNAGHAGTTRYMPMNAKVNSKSIRKVDLSDKKWPKIGQETVLSIDLKKSGRASNTSKKMGLCPQSKAAHKKLATPRRHRVEDELSSQAKSGLRMLFALDEQRVAQAFSSPFPSFVKIMKMFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVTQCEMQVYISGVGKEGPDHQNAHLKLDRLSILPSTC* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1901 594 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Vra6g1901 594 PANTHER B3 DOMAIN-CONTAINING 453 588 - -
Vra6g1901 594 PANTHER B3 DOMAIN-CONTAINING 1 450 - -
Vra6g1901 594 Gene3D - 460 570 IPR015300 -
Vra6g1901 594 Gene3D - 234 349 IPR015300 -
Vra6g1901 594 Gene3D - 9 109 IPR015300 -
Vra6g1901 594 ProSiteProfiles B3 DNA-binding domain profile. 475 571 IPR003340 GO:0003677
Vra6g1901 594 SUPERFAMILY DNA-binding pseudobarrel domain 468 569 IPR015300 -
Vra6g1901 594 ProSiteProfiles B3 DNA-binding domain profile. 254 350 IPR003340 GO:0003677
Vra6g1901 594 CDD B3_DNA 21 105 IPR003340 GO:0003677
Vra6g1901 594 CDD B3_DNA 252 346 IPR003340 GO:0003677
Vra6g1901 594 SMART B3_2 16 107 IPR003340 GO:0003677
Vra6g1901 594 SMART B3_2 254 352 IPR003340 GO:0003677
Vra6g1901 594 SMART B3_2 475 571 IPR003340 GO:0003677
Vra6g1901 594 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 1 450 - -
Vra6g1901 594 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 453 588 - -
Vra6g1901 594 Pfam B3 DNA binding domain 21 106 IPR003340 GO:0003677
Vra6g1901 594 Pfam B3 DNA binding domain 475 562 IPR003340 GO:0003677
Vra6g1901 594 Pfam B3 DNA binding domain 254 346 IPR003340 GO:0003677
Vra6g1901 594 SUPERFAMILY DNA-binding pseudobarrel domain 247 348 IPR015300 -
Vra6g1901 594 SUPERFAMILY DNA-binding pseudobarrel domain 20 112 IPR015300 -
Vra6g1901 594 CDD B3_DNA 473 567 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1901 Vra-Chr6 35602149 35606110 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra6g1901 B3 1.8e-12 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1901 6 35602149 35606110 Vra6g1901 6 35602149 35606110 ECH