Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1895 ATGCCTCTTTCCAGAAAATCGCTTTCCACCGGAGCCCACCTCAACGATGCCGGACCCGATGACAGCACTCCGACACGGCGGTTGACCAGGCAGAGGAAGCTCCGCCACCTCAGCGACCATGACATTGGCTTCTCCTTCTTCCACTCCACCGACTCTTTTTCTGCCTCGCCGGAGCCCCGCTGCGCTTCCGGACACCGCTCCCTCTCTAGTCTGCCGCAACCGCTGCCTCTCCCTGAAGCGCCGTTGACCCGTCGAGCCAAGTCGGTCAGCTCCGCTTCCGTACATCCTCCCCTCTCTGCTTCCTTAGAACATCCTAATTTTTCTTCTTCCGGGAAGGCGTTGCCTCACGATGCAGTGACACGTGCAAAACCTACACTCCATTTGGATTCTACTCCTGCAAATGCAAAATACAATCTGAGAGAGCATATTCCTGCAGCAAGTTTCTTGACAGGCCATAGTTCATTGAAAAATCGAAGAGCAGCATCTCATGGTAATGACTCTGAAGTTAATCCCCACTTGAATTTGGGTGTTGCTGCCAAGCCCAAGAGTGCTCCAACAAGTGTGGTCACTAGTCCTGATACTAGTCCATATAGATCAAATAACATAGACTTCTTTGATTCTACCTTCAACTTCTCTTCAGAAGTTAATGACAAATTGAAAATGTTATCGGCTAAAAGTGTACATAGTCCAGACCATTCCCCTATTCCTTGCCCTCTAAGCCTCACTCGTTACTTCAATCCTAAAATTGAGGAGGGATCTCAGAACCATAAATTTTTGTCCAAGGTGTGCCCTGAAAATAACCATGTTGATGCACATCCCTTGCCTCTTCCTCCTAGAGCTTCATTTCCTGCACAATTATCTGTGCTGCATCAATCCAGTACCATCCATCACGCTACCGAAAATATGCCTTCAGTCAAAGGTCAATGGCAGAAAGGAAAACTTATTGGAAGAGGAACCTTTGGAAGTGTTTTTCATGCAACCAACCTGGAAAATGGAGCCTCGTGTGCAATGAAGGAGATCAATTTAATTCCTGATGATCCTACATCTGCTGAGTGCATGAAACAACTGGACCAGGAAATCAAAATTCTCCATCAACTAAACCACCCCAACATTGTGCGGTATTACGGAAGTGAAATAGTTGGCAATCATTTGTACATATATATGGAATATGTCCATCCAGGATCAATCAGTAAATTTATGCGTGAGCATTGTGGAGCTATGACAGAATCTGTAGTTCGCAATTTTACAAGGCATATTCTCTCTGGTTTAGCTTACTTACACAGTAACAAAACCATACACAGAGACATCAAAGGTGCAAACTTGCTGGTCAATGAATCCGGCATTGTGAAACTTGCAGATTTTGGGCTAGCGAAAATTCTGATGGGGAATTCGTATGATCTTTCTCTAAAGGGTAGTCCTTACTGGATGGCTCCAGAGGTCGTGAAAGGTTCCATAAAGAACGAATCTAATCTTGATGTTGTCACGGGAATTGACATATGGAGCTTAGGGTGCACCATTATAGAGATGTTAACAGGAAAACCTCCTTGGAGTGAAGCTGAAGGGGCTTCAGCCATGTTCAAGGCACTGCAAGAGTCCCCTCCCATACCCGAAACATTATCATCAGTGGGAAAGGATTTCCTCCAAAAATGTTTCCAAAGGGACCCTGCAGATCGACCATCTTCATCAACTCTTCTTAAGCATGCCTTTGTGCAGAATTTATATGATCAAGATGTTCTAGGTCATCCACAATCCTTTCCTAGAGGAGACCTTGGACCAGGAGGTAATTCAGCTAGTCCTAGAGACACCACCACCACCAGAAGTGGCATAATTCAAGCCTCCATTAGCTCACGGTGTTTTAACAAGATTCAGAAACTAGTGGGTGATACTTCCGAACAAATCAATGACCACAAGGAGTCTAATCATATTATACCTTTTAGTCACTCTCATGTTCCAGAAGTGAACATTCTTCAATCTACATTGAAACCTGGTACCCTCAATTACATGTCTGCTGAAAATTCCAGAAACATTTCCACCATGATGAGAATGATCACAAATTTCTGA 2061 0.4469 MPLSRKSLSTGAHLNDAGPDDSTPTRRLTRQRKLRHLSDHDIGFSFFHSTDSFSASPEPRCASGHRSLSSLPQPLPLPEAPLTRRAKSVSSASVHPPLSASLEHPNFSSSGKALPHDAVTRAKPTLHLDSTPANAKYNLREHIPAASFLTGHSSLKNRRAASHGNDSEVNPHLNLGVAAKPKSAPTSVVTSPDTSPYRSNNIDFFDSTFNFSSEVNDKLKMLSAKSVHSPDHSPIPCPLSLTRYFNPKIEEGSQNHKFLSKVCPENNHVDAHPLPLPPRASFPAQLSVLHQSSTIHHATENMPSVKGQWQKGKLIGRGTFGSVFHATNLENGASCAMKEINLIPDDPTSAECMKQLDQEIKILHQLNHPNIVRYYGSEIVGNHLYIYMEYVHPGSISKFMREHCGAMTESVVRNFTRHILSGLAYLHSNKTIHRDIKGANLLVNESGIVKLADFGLAKILMGNSYDLSLKGSPYWMAPEVVKGSIKNESNLDVVTGIDIWSLGCTIIEMLTGKPPWSEAEGASAMFKALQESPPIPETLSSVGKDFLQKCFQRDPADRPSSSTLLKHAFVQNLYDQDVLGHPQSFPRGDLGPGGNSASPRDTTTTRSGIIQASISSRCFNKIQKLVGDTSEQINDHKESNHIIPFSHSHVPEVNILQSTLKPGTLNYMSAENSRNISTMMRMITNF* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1895 686 SMART serkin_6 309 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1895 686 MobiDBLite consensus disorder prediction 86 108 - -
Vra6g1895 686 MobiDBLite consensus disorder prediction 1 27 - -
Vra6g1895 686 Pfam Protein kinase domain 310 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g1895 686 ProSitePatterns Protein kinases ATP-binding region signature. 315 338 IPR017441 GO:0005524
Vra6g1895 686 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 22 682 - -
Vra6g1895 686 MobiDBLite consensus disorder prediction 52 114 - -
Vra6g1895 686 MobiDBLite consensus disorder prediction 581 603 - -
Vra6g1895 686 SUPERFAMILY Protein kinase-like (PK-like) 294 590 IPR011009 -
Vra6g1895 686 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 22 682 - -
Vra6g1895 686 Gene3D Transferase(Phosphotransferase) domain 1 306 584 - -
Vra6g1895 686 ProSiteProfiles Protein kinase domain profile. 309 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1895 Vra-Chr6 35549157 35554674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1895 269 572 MAP Kinase Kinase Kinase AT5G66850 64.145 7.91e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra6g1895 Pkinase 5e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1895 6 35549157 35554674 Vra5g1536 5 21978453 21983746 PCT