Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1894 ATGAGAAGATTCAAACAATGTTCTTCTTCATTCTCTTCTCATTATTCTGCTTCTGAATCCAATCCTAGTAATAATCATAACAGCAACAATGGTGTTAGAGTAAGAGGGACGTGGAGTGCGGAAGAAGATAGGGTTCTCACTGGGCTTGTAGAGGCCCATGGGCCGAAAAACTGGGCCTTGATAAGCCTACACGTAAAGGGCCGTTCTGGGAAGTCTTGCAGGCTTCGGTGGTGCAACCAGCTGAGTCCCACGGTGGAGCACCGACCGTTCACCACGCGTGAGGACGCGATTATCTTGCACGCGCACGACCGGTTAGGGAACAAGTGGGCAGCCATTGCGAGAATGCTTCCGGGACGGACCGATAACGCCGTTAAGAACCACTGGAACGCCACGCTCAAGCGCAGGGTCTCCCAACGACGTCGTTTTGGGGATGACCCATTGACTGCGCTGACTCTGGCGCCGCCGGGAAGCGGCGGCCGAGGTTGGACGGCGGGGTTTCGCGATGTGGTTGCGAAGGAAGTCAGAGAATATGTGTCTTTCTCGTTTTCCGACAACTTGGGCTCTAACGAGAAATTATCCAAATACTAA 588 0.5306 MRRFKQCSSSFSSHYSASESNPSNNHNSNNGVRVRGTWSAEEDRVLTGLVEAHGPKNWALISLHVKGRSGKSCRLRWCNQLSPTVEHRPFTTREDAIILHAHDRLGNKWAAIARMLPGRTDNAVKNHWNATLKRRVSQRRRFGDDPLTALTLAPPGSGGRGWTAGFRDVVAKEVREYVSFSFSDNLGSNEKLSKY* 196
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1894 195 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 140 - -
Vra6g1894 195 CDD SANT 89 132 IPR001005 -
Vra6g1894 195 Pfam Myb-like DNA-binding domain 89 129 IPR001005 -
Vra6g1894 195 Pfam Myb-like DNA-binding domain 35 81 IPR001005 -
Vra6g1894 195 MobiDBLite consensus disorder prediction 1 33 - -
Vra6g1894 195 Gene3D - 88 145 - -
Vra6g1894 195 SUPERFAMILY Homeodomain-like 34 128 IPR009057 -
Vra6g1894 195 Gene3D - 34 86 - -
Vra6g1894 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Vra6g1894 195 ProSiteProfiles Myb-like domain profile. 35 81 IPR001005 -
Vra6g1894 195 CDD SANT 37 79 IPR001005 -
Vra6g1894 195 PANTHER MYB PROTEIN-RELATED 1 140 - -
Vra6g1894 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 136 IPR017930 -
Vra6g1894 195 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Vra6g1894 195 SMART sant 86 134 IPR001005 -
Vra6g1894 195 SMART sant 34 83 IPR001005 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vra6g1894 Vra-Chr6 35544445 35545397 Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra6g1894 Myb_DNA-binding 3.6e-14 CL0123
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1894 6 35544445 35545397 Vra6g1894 6 35544445 35545397 ECH
Vra6g1894 6 35544445 35545397 Vra5g1533 5 21964897 21966111 PCT