LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra6g1890	ATGTTGTCAAGAAAAAGTGTTGTGTGGTTGATGTTTTTGTGTTGGTGGCAGTTTGGCATATCATGCGAGGGGAACAAACAAGGGGAATATCTGTACAGGTTAATTCGATCAAAGAGGAGTGGTGAGAAAGTGATCTCATCAGAAAAAGCTTCAGTGGTCGGAAATGGTGGAGATGAAGATTTATGGAAGGTTGAAGAAGAAAGGGTGTTGATGGAAGATGAGAGAGTGAAGGGTTTACCAGGAGAACCAGAAGGTGTGGATTTTGATCAGTATGGTGGCTATGTAACTGTGGATGCCAAAAGAGGAAGAAGATTGTTCTATTACTTTGTAGAGTCACCTCAAAATGCTTCTAACAAGCCCCTCCTTCTATGGCTCAATGGAGGACCTGGTTGCTCTTCCCTTGGATATGGAGCCATGCAAGAATTGGGACCTTTTAGAGTGAACAGTGATGGAAGAACACTTCGTAGAAACGAATATGCATGGAACAATGTGGCAAACGTTATTTTCCTAGAGTCTCCAGCAGGAGTTGGATTTTCATATTCAAACACTTCTTCAGACTACTCAAACACTGGAGACACGAGCACAGCAATAGACTCTTACACTTTTCTTGTAAAATGGCTTCACAGATTTCCACACTACAAATCTCGAGACTTGTTCATCACTGGAGAAAGCTATGCTGGACATTATGTCCCTCAGCTAGCTCACACTATTCTCACTAATAATAAGCTTACAAATCTTACACTCATTAACCTCAAAGGGATTGCGATTGGGAATGGTTGGATAGATGATAATATATGTGCAAAGGGAATGTATGACTATTTCTGGACACATGCTTTGAACTCAGATGAAACCCATGAAGGAATTGAAAGGCATTGTGACTTTGAGAGTGGGAACATGACAAGTGAATGCAACGAATACCAAATAAGAGGGGATACTGAGATTGGAGTCATTGACATTTATGACATATATGGTCCCCCTTGTGATCCGAATGCAACAAAACCTCATCAAACTTCTCCCACTTACTCTGACAGCAATTTCGACCCTTGTTCTGACGAATATACCAAATCCTACTTGAATCTGGCTAAAGTACAAGAGGCTCTTCATGCTAAAGTCTCAGAATGGTCTCCTTGCAGTGGGGTGGGATGGACAGACAGCCCAGCAACAGTTCTACCCACTATAAATCGGATAATATCAAGTGGCATAAGGACCTGGATATATAGTGGTGATACAGATGGGCGCGTTCCCATAACATCATCTAGGTATTCAGTGAATGCCTTGAAACTTCCAGTGGAGACAACATGGCGTCCCTGGTATTCTGGAGATGAGGTTGGAGGATACTTGATTGGGTACAAAGGACTCACCCTCATCACTGTAAGAGGAGCTGGGCACATGGTTCCAAGTTACCAACCAAAGCGAGCGTTAACCATGATCTCGTTTTTTCTTCAGGGAGAACTTCCTCCCGAATCTTAG	1470	0.4265	MLSRKSVVWLMFLCWWQFGISCEGNKQGEYLYRLIRSKRSGEKVISSEKASVVGNGGDEDLWKVEEERVLMEDERVKGLPGEPEGVDFDQYGGYVTVDAKRGRRLFYYFVESPQNASNKPLLLWLNGGPGCSSLGYGAMQELGPFRVNSDGRTLRRNEYAWNNVANVIFLESPAGVGFSYSNTSSDYSNTGDTSTAIDSYTFLVKWLHRFPHYKSRDLFITGESYAGHYVPQLAHTILTNNKLTNLTLINLKGIAIGNGWIDDNICAKGMYDYFWTHALNSDETHEGIERHCDFESGNMTSECNEYQIRGDTEIGVIDIYDIYGPPCDPNATKPHQTSPTYSDSNFDPCSDEYTKSYLNLAKVQEALHAKVSEWSPCSGVGWTDSPATVLPTINRIISSGIRTWIYSGDTDGRVPITSSRYSVNALKLPVETTWRPWYSGDEVGGYLIGYKGLTLITVRGAGHMVPSYQPKRALTMISFFLQGELPPES*	490

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra6g1890	489	SUPERFAMILY	alpha/beta-Hydrolases	76	484	IPR029058	-
	Vra6g1890	489	PANTHER	CARBOXYPEPTIDASE	21	487	-	-
	Vra6g1890	489	Gene3D	-	389	483	-	-
	Vra6g1890	489	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	21	487	IPR001563	GO:0004185\|GO:0006508
	Vra6g1890	489	Pfam	Serine carboxypeptidase	80	482	IPR001563	GO:0004185\|GO:0006508
	Vra6g1890	489	ProSitePatterns	Serine carboxypeptidases, serine active site.	220	227	IPR018202	GO:0004185
	Vra6g1890	489	Gene3D	alpha/beta hydrolase	71	329	IPR029058	-
	Vra6g1890	489	Gene3D	-	349	380	-	-
	Vra6g1890	489	PRINTS	Carboxypeptidase C serine protease (S10) family signature	157	169	IPR001563	GO:0004185\|GO:0006508
	Vra6g1890	489	PRINTS	Carboxypeptidase C serine protease (S10) family signature	170	180	IPR001563	GO:0004185\|GO:0006508
	Vra6g1890	489	PRINTS	Carboxypeptidase C serine protease (S10) family signature	206	231	IPR001563	GO:0004185\|GO:0006508
	Vra6g1890	489	PRINTS	Carboxypeptidase C serine protease (S10) family signature	453	466	IPR001563	GO:0004185\|GO:0006508
	Vra6g1890	489	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	22	-	-
	Vra6g1890	489	ProSitePatterns	Serine carboxypeptidases, histidine active site.	453	470	IPR033124	GO:0004185

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra6g1890	Vra-Chr6	35508459	35512863	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra6g1890	354	484	Calmodulin-binding Proteins	AT2G22960	28.676	5.69e-14	68.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra6g1890	6	35508459	35512863	Vra6g1890	6	35508459	35512863	ECH