Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1889 ATGCAACAATCGAACGGTTCCGATTCCTCGTTGCAGTCGCAGTCCACGGAGCAGAATGTTCCGCGGCAGCCGGCAGGGTCTCCGGCGGTGGCGCGGCCGCAGCAGTGGCTCCCGATGCAGTATCCAGCGGCCATGGTAATGCCGCACCACATGCTGCCTCCGCAGCACTACGCGCCGCCGCCGTACATGCCTTTCCATCACCACCAGTACGCGCCGCCGCACGTCCCGCACCAACAGCATCAGAACGGATCCAGCGGCGAGAACAAAACCGTCTGGATCGGCGATTTGCATCACTGGATGGACGAGAACTATCTCCATCGCTGTTTCGCCTCCACCGGCGAGATTTCCTCTATCAAGGTTATTCGCAATAAGCAAACTGGCCTATCAGAGGGTTACGGATTCGTGGAATTCTATTCACATGCTACTGCTGAGAAAGTTTTGCAAAACTATGCTGGAATTTTGATGCCCAATACAGAGCAAGCATTCCGTCTAAACTGGGCATCATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTGTTGCATGAAACTTTTGCTAGTGTGTTTCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGCGATGACAGTGAAAGATCCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCCAGCAGGCCTATGCGCATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCCACAGGGAGGTCAGTCGAATGGCACATCCAGCCAATCTGAAGCAGATTCTACCAACACAACAATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAGGACCTCAGGCAGCCATTCTCCCAGTACGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGATGTGGTTTTGTCCAGTTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAACGGGACAACAATTGGAAAGCAGACAGTCCGACTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAATCCCTGGACAGGGGCATATTATGGGGCCCCTATTTATGATGGTTATGGATACGCATTGCCTCCTCGTCATGATCCCAGCATATATGCTGCTGCGTATGGGGCTTACCCTCTTTATGGTGCCCACCAGCAACAAGTAAGCTGA 1254 0.5 MQQSNGSDSSLQSQSTEQNVPRQPAGSPAVARPQQWLPMQYPAAMVMPHHMLPPQHYAPPPYMPFHHHQYAPPHVPHQQHQNGSSGENKTVWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQAFRLNWASFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDSERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHPQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1889 417 SUPERFAMILY RNA-binding domain, RBD 164 276 IPR035979 GO:0003676
Vra6g1889 417 MobiDBLite consensus disorder prediction 63 88 - -
Vra6g1889 417 MobiDBLite consensus disorder prediction 265 293 - -
Vra6g1889 417 Gene3D - 181 257 IPR012677 -
Vra6g1889 417 MobiDBLite consensus disorder prediction 257 295 - -
Vra6g1889 417 Gene3D - 265 365 IPR012677 -
Vra6g1889 417 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 28 416 - -
Vra6g1889 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Vra6g1889 417 MobiDBLite consensus disorder prediction 1 33 - -
Vra6g1889 417 CDD RRM3_NGR1_NAM8_like 286 357 - -
Vra6g1889 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 359 IPR000504 GO:0003723
Vra6g1889 417 MobiDBLite consensus disorder prediction 1 23 - -
Vra6g1889 417 SUPERFAMILY RNA-binding domain, RBD 51 167 IPR035979 GO:0003676
Vra6g1889 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 416 - -
Vra6g1889 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 253 IPR000504 GO:0003723
Vra6g1889 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 352 IPR000504 GO:0003723
Vra6g1889 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 158 IPR000504 GO:0003723
Vra6g1889 417 SMART rrm1_1 183 257 IPR000504 GO:0003723
Vra6g1889 417 SMART rrm1_1 288 355 IPR000504 GO:0003723
Vra6g1889 417 SMART rrm1_1 90 165 IPR000504 GO:0003723
Vra6g1889 417 CDD RRM2_SECp43_like 181 260 - -
Vra6g1889 417 SUPERFAMILY RNA-binding domain, RBD 276 387 IPR035979 GO:0003676
Vra6g1889 417 CDD RRM1_SECp43_like 90 170 - -
Vra6g1889 417 Gene3D - 88 168 IPR012677 -
Vra6g1889 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1889 Vra-Chr6 35503276 35509071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1889 91 367 Eukaryotic Initiation Factors Gene Family AT4G34110 28.975 8.39e-30 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1889 6 35503276 35509071 Vra5g1528 5 21905849 21910122 PCT