Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1882 ATGGAAGCAACTCAAACTCCAAGGAAAGGTGATGATGGAGACCTGATTACTGTGCTGAGTATTGATGGTGGTGGCATTCGCGGAATCATTCCAGGAGTTTTACTGGGTTTCCTCGAATCAGAGCTTCAGAAGCGGGATGGTGCTGATGCAAGGCTAGCAGATTACTTTGATGTGATTGCAGGAACAAGCACTGGTGGATTAGTCACTGCAATGCTTACTGCTCTAGATGAAAACGGCAGACCCTTGTACGCAGCCAAAGATATTAAGGATTTCTACCTTGAGCATACCCCAAAAATCTTCCCACAGAATAGTGGCTGGAATTTAATCTCATCATTGATGAAATACAGCAGAACTCTGATGGGACCACAGTACGATGGCAAGTATTTACACAAGCTCATCAGGGAAAAACTAGGGGACACAAAATTGCAACACACATTAACCAATGTCGTTATCCCCGCATTTGATATCAAACACCTTCAACCCATCATCTTTTCCAGCTTCCAGGTGAAGAAGAGGCCATACTTGAATGGGTCGTTGTCTGATATATGCATTTCAACCTCAGCAGCACCAACCTATCTTCCAGCTCATTCCTTTGAAACCAAAACCAACCATGGTAGTTTCAAATTCGACCTTGTAGATGGTGGTGTAGCAGCAAATAATCCGGCACTGGTGGCCATGGCAGAAGTGTCTAACAAAATCCGCAATGAAGGGTCATGTGGAAGCTTGAATGTAAAACCGTTGCAATACAAAAAGTTTNTGGTGATATCGTTGGGAACAGGTTCTCAGCAACATGAAATGAAATACAATGCTGCTAAGGCATCTAAATGGGGCGTTTTAGGCTGGGTTATCTCCTCCGGTGGCAATCCTCTGATNGATGTCTTCAGTCATGCAAGTTCTGACATGGTTGATTTCCACATCTCCTCCGTTTTCCAAGCACGCAACGCTGAAGAAAACTACCTCCGAATCCAGGACGATACTTTAAATGGGGACTTATCTTCGGTGGACGGGGCCACGGAGAAGAATTTGAATGGCCTCGTCCAAGTTGCGGAAGCATTGTTGAAGAAACCAGTTTCAAAGATTAACTTGAGTACTGGTATTCATGAACCTGTTAAGTCTAACGAAACCAACGCAGAAGCCTTGACCAGGTTTGCGATACGACTGTCTGAACAGAAGAAATTTCGGAAATCTCAAACGTTTGTGAAGAATGGGAATACTTGA 1218 0.4401 MEATQTPRKGDDGDLITVLSIDGGGIRGIIPGVLLGFLESELQKRDGADARLADYFDVIAGTSTGGLVTAMLTALDENGRPLYAAKDIKDFYLEHTPKIFPQNSGWNLISSLMKYSRTLMGPQYDGKYLHKLIREKLGDTKLQHTLTNVVIPAFDIKHLQPIIFSSFQVKKRPYLNGSLSDICISTSAAPTYLPAHSFETKTNHGSFKFDLVDGGVAANNPALVAMAEVSNKIRNEGSCGSLNVKPLQYKKFXVISLGTGSQQHEMKYNAAKASKWGVLGWVISSGGNPLXDVFSHASSDMVDFHISSVFQARNAEENYLRIQDDTLNGDLSSVDGATEKNLNGLVQVAEALLKKPVSKINLSTGIHEPVKSNETNAEALTRFAIRLSEQKKFRKSQTFVKNGNT* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1882 405 Gene3D Cytosolic phospholipase A2 catalytic domain 5 400 - -
Vra6g1882 405 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 19 226 IPR002641 GO:0006629
Vra6g1882 405 SUPERFAMILY FabD/lysophospholipase-like 16 371 IPR016035 -
Vra6g1882 405 Pfam Patatin-like phospholipase 19 226 IPR002641 GO:0006629
Vra6g1882 405 PANTHER XYLOSE ISOMERASE 8 400 - -
Vra6g1882 405 PANTHER PATATIN 8 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1882 Vra-Chr6 35434560 35437099 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1882 13 394 Miscellaneous Gene Families AT2G26560 59.530 8.33e-160 454
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1882 6 35434560 35437099 Vra6g1882 6 35434560 35437099 ECH
Vra6g1882 6 35434560 35437099 Vra5g1526 5 21892002 21893794 PCT