Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1879 ATGGAGAGATCAGANTCATCCGTTGAACAAATTCAGCCTCCAACTTATGGAAACTTAGTCACCATTCTCAGCATCGATGGTGGTGGCATCAGGGGCATCATCCCTGCCACCATTATTCATTTCCTTGAGTCTCAGCTTCAGGAGTTGGATGGCCCAGAGGCAAGACTTGCAGATTATTTTGATGTGATATCAGGAACAAGCACGGGAGGTCTTGTAACAGCTATGCTAACTGCTCCAGACAGCAACAATCGACCACTTTTTGCTGCCAAAGACATCAAACCCTTTTACTTGGAACACAGTCCTAAAATTTTCCCACAACACAGTGGCCTTGGTGGGACTATAATAGCAAACTTAGTAAGATCTTTGGGAGGACCCAAATACGATGGGAAATACCTTCGTCAGGTGGTGAGAGAGAAACTTGGAGAGATTCGGTTGCATGAAACTCTCACCAACGTTGTCATTCCCACCTTCGACATCAAGTCTATGCAACCCATTATTTTTTCGTCCTATCAGATGAAGATGTCTCCTTTCATGGACGCTAAACTCTCAGACATATGCATAAGCACCTCCGCTGCACCTACTTATCTGCCTGCACACAATTTCAAGAACCAAGATTCTGAAGGGAAGATACACGAATTTAACCTCATTGACGGTGGCGTTTGTGCAAATAATCCGACCTTAGTTGCCATGAACGAAGTTACAAAGCAAATCATTAAGCAAAACTCTGATTTCTTTGCCATCAAGCCTACGGAATATAATCGGTTCCTGATAATTTCAATAGGCACTGGGACAGCAAAAAATGAGGAAAAATTCAATGCTCAAATTGCAAGCAAATGGGGTTTGTTGGATTGGCTAACCTACGATGGCAGCACTCCCTTAACAGACGTTTTCAGTCAGTCCAGTGCAGATATGGTTGACTTCCATTTATCTGCTGTCACTCAAGCACTTCAGTCACAAGATAATTACCTTCGAATTCAGGATGACACATTGACCGGAACAGATTCTTCAGTTGACATTGCTACGAAGGAGAACCTGGAGAAGCTTAGCGAAATCGGTGAAAATCTGTTGAAGAAACCAGTCTCTAGGGTGAACTTAGAGAATGGTCTCTTTGAGCCACTCAAAAACGGGGAAACAAATCAAGAAGCTCTTAAAAGGTTTGCAAAAATACTGTCGCAAGAGAGAAGGCTCCGTGAAATGAGATCCCCACACACTAAGAAGCCCTTCTAG 1227 0.4336 MERSXSSVEQIQPPTYGNLVTILSIDGGGIRGIIPATIIHFLESQLQELDGPEARLADYFDVISGTSTGGLVTAMLTAPDSNNRPLFAAKDIKPFYLEHSPKIFPQHSGLGGTIIANLVRSLGGPKYDGKYLRQVVREKLGEIRLHETLTNVVIPTFDIKSMQPIIFSSYQMKMSPFMDAKLSDICISTSAAPTYLPAHNFKNQDSEGKIHEFNLIDGGVCANNPTLVAMNEVTKQIIKQNSDFFAIKPTEYNRFLIISIGTGTAKNEEKFNAQIASKWGLLDWLTYDGSTPLTDVFSQSSADMVDFHLSAVTQALQSQDNYLRIQDDTLTGTDSSVDIATKENLEKLSEIGENLLKKPVSRVNLENGLFEPLKNGETNQEALKRFAKILSQERRLREMRSPHTKKPF* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1879 408 Pfam Patatin-like phospholipase 23 230 IPR002641 GO:0006629
Vra6g1879 408 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 23 230 IPR002641 GO:0006629
Vra6g1879 408 PANTHER PATATIN 1 406 - -
Vra6g1879 408 PANTHER XYLOSE ISOMERASE 1 406 - -
Vra6g1879 408 Gene3D Cytosolic phospholipase A2 catalytic domain 9 402 - -
Vra6g1879 408 CDD Pat17_isozyme_like 17 368 - -
Vra6g1879 408 SUPERFAMILY FabD/lysophospholipase-like 18 369 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1879 Vra-Chr6 35412297 35414633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1879 11 407 Miscellaneous Gene Families AT2G26560 64.987 0.0 527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1879 6 35412297 35414633 Vra6g1879 6 35412297 35414633 ECH