Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1871 ATGGCTGCCAGCAGAGAGCAAACAATTCCTCTTTCGGTGCTCCTGAAGCGTGAATTGGCTCATGAGAAAATTGAGAATCCTGAGATTGTCCATGGTCAAGCTGGCCAAAGCAAGAAAGGGGAGGATTTAACATTGGTAAAAGCAGAATGCCAAAGGATGGTGGGGGATGGGGTGTCTACATATTCAGTTTTTGGGATGTTTGATGGACACAATGGATCTGCTGCTGCTATTTATACTAAGGAGAATCTTCTAAATAATGTTTTAAGCGCAATTCCTCCGGATCTTAACAGAAATGAATGGGTAGCAGCACTGCCGAGGGCTTTAGTTGCTGGCTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGGACAAAAATCTGGAACAACTGTCACCTTTGTGATTATAGAAGGTTGGGTTGTAACAGTTGCATCAGTTGGCGATTCCCGTTGTGTACTTGAATCTTCTGATGGTGAGATTTATTACTTGTCTGCAGATCACAGACTAGACACGAATGAAGAGGAAAGGGTGCGGATCACCTCTAGCGGTGGTGAAGTTGGTCGGCTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCCGGTGGCTTGTGTCTCTCACGATCTATTGGAGATATGGATGTTGGTGAATTTATTGTCCCTGTACCGCATGTAAAGCAAGTGAAGTTGTCCACTGGTGGAGGCCGACTTGTTATCTGCAGTGATGGTGTTTGGGATTCTCTGCCTGCAGAAGTAGCACTTGATTGTTGTCGTGGAATGTCACCTGATGCCGCAGCACCACATATTGTTAAAGAAGCTGTACAAGCAAAGGGACTTAGAGATGATACAACCTGCATCGTTGTTGATGTATTACCTCAGGAGAAGCCACCAGCTTCTGCACCACAAACAAAGAAGCCAGTGAAGGGAATGCTCAAGTCCATGTTTCGTAGAAAGTCTTCTGAATCATCTTCTTATAACGACAAAGATTACGTTGAGCCAGATGTTGTAGTGGAATTGTATGAAGAAGGATCTGCCATGCTTTCTGAGAGGTTCAATACTAAATATCCAGTCTGCAACATGTTTAAGTTGTTTATGTGTGCAGTGTGTCAAGTAGAGATAAAACCTGGAAAGGGCATTTCAATACATGAGGGTGAATCCGATTCTGGAAAATTTCGTCCCTGGGACGGACCTTTTCTGTGCTCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGATCATCAGGTAGAGTTAGCAGTGGAAGTGACGACTGA 1284 0.4408 MAASREQTIPLSVLLKRELAHEKIENPEIVHGQAGQSKKGEDLTLVKAECQRMVGDGVSTYSVFGMFDGHNGSAAAIYTKENLLNNVLSAIPPDLNRNEWVAALPRALVAGFVKTDKDFQEKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSDGEIYYLSADHRLDTNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSTGGGRLVICSDGVWDSLPAEVALDCCRGMSPDAAAPHIVKEAVQAKGLRDDTTCIVVDVLPQEKPPASAPQTKKPVKGMLKSMFRRKSSESSSYNDKDYVEPDVVVELYEEGSAMLSERFNTKYPVCNMFKLFMCAVCQVEIKPGKGISIHEGESDSGKFRPWDGPFLCSSCQEKKEAMEGKRSSGRVSSGSDD* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1871 427 PANTHER ALPHABET, ISOFORM E-RELATED 4 422 - -
Vra6g1871 427 SMART PP2C_SIG_2 45 292 IPR001932 -
Vra6g1871 427 Gene3D - 29 299 IPR036457 -
Vra6g1871 427 SMART PP2C_4 20 290 IPR001932 -
Vra6g1871 427 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 4 422 - -
Vra6g1871 427 CDD PP2Cc 35 292 IPR001932 -
Vra6g1871 427 SUPERFAMILY PP2C-like 30 292 IPR036457 -
Vra6g1871 427 ProSiteProfiles PPM-type phosphatase domain profile. 40 292 IPR001932 -
Vra6g1871 427 Pfam Protein phosphatase 2C 53 276 IPR001932 -
Vra6g1871 427 MobiDBLite consensus disorder prediction 408 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1871 Vra-Chr6 35353926 35358961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1871 7 426 PP2C-type Phosphatase Gene Family AT1G47380 77.435 0.0 692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1871 6 35353926 35358961 Vra6g1871 6 35353926 35358961 ECH
Vra6g1871 6 35353926 35358961 Vra5g1519 5 21846224 21851634 PCT