Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1867 ATGTTCATTCCCTCTTTTGAGAAAGATCAAAACATGAAAAATGTTAGTCGTTCCAATTTACCACTAAAGATAATAGATGTGCCGGATAGAAAGGACTTTCATGAGAGTGTGATGATGCAAAAGATAATGATTTCATTGAAAGAAGCAGACAGAAACAAAGATGGTCGCTACAACAAGGATGAACTGAAGCATGCCCTCAAAGACTTAGGTGCCTTTTTCCCTGCCTGGAGAGTCCGTCGTGCTTTTAACAAAGTTGATGTCAACCATGACGGTCAAATCAGCGGAAAGGAAATCGATTCTCTACTCGAGTATCTTTGTTCTCATGGGTATGGAAAATAA 339 0.3923 MFIPSFEKDQNMKNVSRSNLPLKIIDVPDRKDFHESVMMQKIMISLKEADRNKDGRYNKDELKHALKDLGAFFPAWRVRRAFNKVDVNHDGQISGKEIDSLLEYLCSHGYGK* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1867 112 Gene3D - 5 108 - -
Vra6g1867 112 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Vra6g1867 112 SUPERFAMILY EF-hand 37 101 IPR011992 -
Vra6g1867 112 SMART efh_1 77 105 IPR002048 GO:0005509
Vra6g1867 112 SMART efh_1 41 69 IPR002048 GO:0005509
Vra6g1867 112 ProSiteProfiles EF-hand calcium-binding domain profile. 77 108 IPR002048 GO:0005509
Vra6g1867 112 ProSitePatterns EF-hand calcium-binding domain. 86 98 IPR018247 -
Vra6g1867 112 Pfam EF hand 80 98 IPR002048 GO:0005509
Vra6g1867 112 Pfam EF hand 46 64 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1867 Vra-Chr6 35323217 35323555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1867 28 101 EF-hand Containing Proteins AT3G59440 32.432 4.08e-07 44.7