Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1860 ATGCATATTCCAGCCAAAGAAAGAAACAGTGAGGAAGCAGAGTGGACAACGAAGTTATCGTTGGTAGTAGCAGTACTGCTTCTGTGGGTGTGGTCAGAAGCTACAGCTAATGCAAATGATGATGAGCTAAAAAGGAGCAACATAGACGAGTGCTCAATGTTGAAGTCGAAGATTGTCGTGAACATTGGAGCAGCCGTAGAGTTGAATTCTCGAGTGGGAAAAGAACAGAAGATAGCAATGGAAGTTGCAATTGAAGACATGAATCGACAGAGCTGCTATGAGCTTGCCTTGAACTACAGTTATAACTTTCATCGCAACCCATCATCTCCCACCATGTTCGCTGCCGATCTTGCAAACAGCAAACAAGTGCAAGTTGTCGTAGGAACAAAACTGGATGCAGCAACGTTATTCCTCTCCATTGACGAAAACTCAAAGGATGTTCCCATCATATCTCTAACCTCAACAGCTACTCCAGAAATAGCTTCAATCCCATTGCCACACTTCATCCAAATGGGCCATGAAGTCACCCTTCACATGCACTGCACTGCATCCATCATACACCAATTCCATTGGCGAAAGGTTACAGCAATTTACGAGCACAACAACCTCTTTGCCTCTCATTCAGAGATACTGACAAGACTCTCTTACTCTCTGCGTCTGGTCAATGCTGAAATCGATCACCATGTAGCTTTTCCTTCAATGGCCCTTCTCTCAAACCCAACCGAGATCATAGAACAAGAGCTTACAAGGCTCAAGAGCAAGAGCAATAGGGTGTTCTTGCTTATTCAATCTTCCTTGGAGTTTGCCACTTTGCTTTTTCAGAAGGCAAAGCAAATGGGAATGATGGAAAAAGGGTCAGTGTGGATCATTGCAGATGATGTAGCCAACCACCTTGATTCCCTTGATTCTTCTGTCACTTTCAACATGCAAGGTGTCATGGGGTGCAAAACCAACTTCATGGAAGTGAGTGAAAGGTTCAAACGTTTCAAGTTCATGTTTAGGAGAAAGTTTGCACTGGAATACCCCGAGGAAGAAAGATTGCATCCGAGTGTCTTTGCTCTCAGGGCTTACGATGCTGTTTGGACCATTGCTAAAGCCTTGGAGAGCTCACAGGGAAACTTTTCCTTATCAGAAAATATTTTGCATAGTGATCACGAGGGCCTTAGTGGGAAGATAAGGTTCAAAGGAAGAATGTTAATGGAATCACCAACCTTTAAGATTGTCAATGTTGTTGGAAAAGGTTACAAAGAGTTAGCATATTGGTCAATGGAGTCTGGTTTGAGTGAGAGCCTTGTTGAGCATGAGGTAGTGAACACAACAACTGGTGCTGGTTCTGCTAGAAGGCTTTTAAGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGTGTACAATAGCAGTGAGGGAAAGCCTTTGAAAATTGGGGTTCCCGCTGTTGATCCATGTCCTCAGTTTGTGAATGTGAGCCATGATAAGAGACTGAATGAAACCCAATTCACTGGTTTCTCAATCAATGTCTTTGAATCAGTTGTGCAACGCCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTACGATCAGATAGTTGAACAAGTGAACAATAAGTACCTTGATGCTGCTGTGGGGGATATACAAGTGGTGGAACATAGATATGCATTTGCTGAATTCAGTCATCCATATGTTGAATCTGGCATAGCCATGGTGGTGAAAGTAAAGCCAGATAGATCCAAAGAAACCTGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATGCTAATGGCAGCAATGCATCTGTTCATAGCATTTGTAATCTGGTTCATTGAAGGTGAAAACAATTCGGAGCTCAAGAGTCTTGGGGCCATTCTCTGGTTTTCTGTCACCACATTATTCTTCATACACAGAGAACCAGTAAATAGCAACTTGGCCAGAGTAGTGCTAGCACCTTGGTTATTTGCTATTCTGATAGTGACACAAAGTTTTACTGCGAGCCTTTCATCCATGATGACAGTGTCCCATCTTGAACCAGCTGTGCCTGATATACAAACACTGCTGAAGACAAATGCAATCATAGGGTGCAATAAGAACACTTTTTTGGTTCATTACTTAGTTGATGAACTCAAATTCCAGCCACAGAATATCAGGGTCTTTGACTCCATCCATGATTTCCCAAGAGCATTTGAGAACAAAGAAATTGTGGCTTCTTTCACCATTGCCCCTCATGCTGATGTCTTCCTAGCCACCTATTGCAAGGGCTACATCAAAGCAGGACCTACCTTGAAGCTTGGTGGATTAGGCTTTGCATTTCCAAAAGGTTCAAGTTTAGCAATTGACATATCCCGAGCAACCTTAAAGGCCATAGAAAGTGGAGAAGTGCAAAAACTAGAACAGAAAATGTTGTCTACAACTAATTGTGGATCTACAAACAACAAAATACAAAATGAACAACTTGGTCCTCAACCTTTCTTTGGCTTGTTTGGCATTTGTGGAAGCATTGCTGTCATAGGTTTATTGGCAACCATTGTTCACTTTGTTAAAAGGAAAGCACAAACATTTATGAATTACCTATTACTGTCACAGTTACAAAGAGGATTGCAGATAATCAAGCTTTTTGCTCAAAAGCATCCATACAAGTACAGAAAAACTGCACCTGCCCAAGATGCAAATAGTAGAGAGAATGTATCTCAAAACAATGAGCTAGCTACACCAAGTATTGAGTTACCAATTAACTGCCACACATGA 2766 0.4205 MHIPAKERNSEEAEWTTKLSLVVAVLLLWVWSEATANANDDELKRSNIDECSMLKSKIVVNIGAAVELNSRVGKEQKIAMEVAIEDMNRQSCYELALNYSYNFHRNPSSPTMFAADLANSKQVQVVVGTKLDAATLFLSIDENSKDVPIISLTSTATPEIASIPLPHFIQMGHEVTLHMHCTASIIHQFHWRKVTAIYEHNNLFASHSEILTRLSYSLRLVNAEIDHHVAFPSMALLSNPTEIIEQELTRLKSKSNRVFLLIQSSLEFATLLFQKAKQMGMMEKGSVWIIADDVANHLDSLDSSVTFNMQGVMGCKTNFMEVSERFKRFKFMFRRKFALEYPEEERLHPSVFALRAYDAVWTIAKALESSQGNFSLSENILHSDHEGLSGKIRFKGRMLMESPTFKIVNVVGKGYKELAYWSMESGLSESLVEHEVVNTTTGAGSARRLLSSVDWPGGLKTVPKGWVYNSSEGKPLKIGVPAVDPCPQFVNVSHDKRLNETQFTGFSINVFESVVQRLPYHLPFVFVPFYGSYDQIVEQVNNKYLDAAVGDIQVVEHRYAFAEFSHPYVESGIAMVVKVKPDRSKETWMFMDAFTKEMWMLMAAMHLFIAFVIWFIEGENNSELKSLGAILWFSVTTLFFIHREPVNSNLARVVLAPWLFAILIVTQSFTASLSSMMTVSHLEPAVPDIQTLLKTNAIIGCNKNTFLVHYLVDELKFQPQNIRVFDSIHDFPRAFENKEIVASFTIAPHADVFLATYCKGYIKAGPTLKLGGLGFAFPKGSSLAIDISRATLKAIESGEVQKLEQKMLSTTNCGSTNNKIQNEQLGPQPFFGLFGICGSIAVIGLLATIVHFVKRKAQTFMNYLLLSQLQRGLQIIKLFAQKHPYKYRKTAPAQDANSRENVSQNNELATPSIELPINCHT* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1860 921 SMART GluR_14 477 810 IPR001320 GO:0015276|GO:0016020
Vra6g1860 921 Gene3D - 353 472 - -
Vra6g1860 921 CDD GluR_Plant 474 808 - -
Vra6g1860 921 SUPERFAMILY Periplasmic binding protein-like II 455 806 - -
Vra6g1860 921 Pfam Bacterial extracellular solute-binding proteins, family 3 500 807 IPR001638 -
Vra6g1860 921 PANTHER GLUTAMATE RECEPTOR 53 882 - -
Vra6g1860 921 CDD PBP1_GABAb_receptor_plant 61 431 IPR044440 -
Vra6g1860 921 Gene3D - 772 806 - -
Vra6g1860 921 Gene3D - 473 599 - -
Vra6g1860 921 Gene3D - 175 346 - -
Vra6g1860 921 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 53 882 - -
Vra6g1860 921 SUPERFAMILY Periplasmic binding protein-like I 59 466 IPR028082 -
Vra6g1860 921 Pfam Ligand-gated ion channel 808 838 IPR001320 GO:0015276|GO:0016020
Vra6g1860 921 PIRSF IGluLR_plant 16 379 IPR017103 -
Vra6g1860 921 PIRSF IGluLR_plant 369 913 IPR017103 -
Vra6g1860 921 Pfam Receptor family ligand binding region 77 411 IPR001828 -
Vra6g1860 921 Gene3D - 697 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1860 Vra-Chr6 35212870 35218746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1860 59 854 Ion Channels AT2G17260 30.260 3.44e-116 375