Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1855 ATGGCTCTTCTACTTGATAACTGTGAGAGCATTTTGCTCTCTTTGGACACACACAAATCAGTTCCTGCACCTTTCCTTACCAAAACATATCAACTTGTCGATGATCCCTCCACCGACCACATAGTCTCTTGGGGCGAGGACGACGCTACCTTCGTTGTTTGGCGGCCCCCAGAGTTTGCTAGAGACCTTCTCCCCAACTACTTCAAACACAACAACTTCTCTAGCTTTGTTCGCCAACTCAACACCTATGGTTTCAGAAAGATTGTGCCTGATAGATGGGAGTTCGCAAATGAGTTCTTCAAGAAAGGAGAGAAGCACTTGCTGTGCGAGATCCACAGAAGGAAAACCCATCACCACCATCACCAACAAGTCCATCATCAGTTTGGACTCAATCTTCCCCCTTTCTTTCCCTTCCCTCCACATGACTCCGACGAGTTACCCAATTGCTTCGACTCCCCCCCTAGAGGAGTTCCAACTAGAAACAACATCATCAACGACAACACCAACACCTACAACACTGTCACTGCACTTTCTGAGGACAACGAAAGACTGAGGAGAAGCAACAACATGCTCATGTCAGAGCTCGCACACATGAAGAAGCTTTACAACGACATCATCTACTTTGTTCAAAACCATGTCAAACCCGTGGCTCCAAGCAACACTTACCCTTCTCTTCTACTATGCAATAACAGCACCACCAACAACAACTCTCACATAAACAACGTTTCAACAGTTCAGAGACCGGTGAAACAATTCGTGGCGTGTTATTCCAACAACAGTAAGCAAGCGCGTACTGTGAACTCTCCCACTAACAGCTCCATCACCATCGTTGAAGATGAACCTATCAGTAACAGCAGCAAGACCAAGCTTTTCGGAGTGTCTCTTCAATCCAAGAAAAGGGTGCACCCCGAGTACGGATCTAACAATCTTCAAACTTCAGAAACCAATAAGGCGCGTTTGCTGGTGGAAAATGATGATTTCTTTGGCTTAAATCTCATGCCCCCTTCAACCTGTTAG 1017 0.4612 MALLLDNCESILLSLDTHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTHHHHHQQVHHQFGLNLPPFFPFPPHDSDELPNCFDSPPRGVPTRNNIINDNTNTYNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNTYPSLLLCNNSTTNNNSHINNVSTVQRPVKQFVACYSNNSKQARTVNSPTNSSITIVEDEPISNSSKTKLFGVSLQSKKRVHPEYGSNNLQTSETNKARLLVENDDFFGLNLMPPSTC* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1855 338 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g1855 338 Gene3D - 17 116 IPR036388 -
Vra6g1855 338 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Vra6g1855 338 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g1855 338 Coils Coil 174 194 - -
Vra6g1855 338 PANTHER BNAC06G00310D PROTEIN 12 337 - -
Vra6g1855 338 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 337 IPR027725 -
Vra6g1855 338 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g1855 338 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g1855 338 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra6g1855 338 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1855 Vra-Chr6 35173243 35174677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1855 1 337 HSF AT1G46264 55.014 8.53e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra6g1855 HSF_DNA-bind 4.1e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1855 6 35173243 35174677 Vra6g1855 6 35173243 35174677 ECH
Vra6g1855 6 35173243 35174677 Vra5g1504 5 21731014 21732682 PCT