Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1853 ATGGATCCTCCAACCGGACCACCCAGGAAAAAAAGGAAGATGTCAAAATCCAAAGGCATTCCATCTTTTGATTCCCACCGGTTCCTTACAGAAGATCACCAACAATGGTATGCAGTAGTCGAGAACCGGAACTTATTACCAGAACGAAAGGTTGTTTTACAAACAGGTGAACACGAAGAGTTTCAACAAGAGCTCAAGAGGCGAAAATGGATCAAATTGACGAAATACGCAGCTCATGCAAACGTAGCCGTTGTAAAAGAATTCTATGCTAATGCAATGTTGCTCAAAGCAGGAGATCCAACCTTCAAAAGCTTTGTCAGAGGGAAAGAGATATCCTATAGTGGCCGAGTCATTAACCATTTCCTGGGTACGGAACTAAATTTGGGTCCATCAGGCTGTCAATATGTTGAATGGTGCAATAAGAAAAAGGACTACTTGAAGGTGGCTGAAAAACTGTGCAAGCGTGGGGCAGACTATGTAACTAGTGCAGCAGGCCACAAACGGAGAATTTTGAGAGGCGATTTGGTTCCCTTAGCGCAGATATGGACTTCTTTTCTGCATTCCAACATTTCTCCTTGTTCTCACACCTCAGATATCACTGAGAGGAGATCCCAAATGGTATATGCTATTATGGCTGGATTATCCATGGATGTTGGAGCCATCATTGCTCAGGAGATTCATTTGACAGCAAACTCAGGCAGTACTGGTCAGCTGAGTTTCCCATCTCTAATCACCGAGCTTTGTCGCAGGGCAGGAGTTGATGTCTCAGAGCCACCTTTCCAAAAACCTCGGCAGCCTATTAATGCTCAGTTCATTTTGAAAAACTGTATGGGAAGTGAAACTCGTGCTCCCTTAGTGAGAGCTGCGCCTCCTGCTGTACCTGGTAGCATCCCTCATCGACTCGAGCTATTAGAGATTGATCAGCAATTGATCCACCAGAAGTTGGATGCCTTGTACCGTTCCCAGGTTTTGATGATGAGCAGCATACGGAGCCTCATACCTGGCATTTCTCAGGACTCATTTCATTTTCCATCTGCAGAGGAGTTTGATTCCAATGTCGCATGGCCGAAACTACCTGAAAAACAGGATTCTATTGAGGAAACGGATGAACATGCAGTTGAGAAGGAGGTGGATGAGCCTGCTGAGGAGGAGGGGGTGAGGATGCTGTTGATGCTAAGGAAGAAGAGGATGAGCAGCTTGGAGACTAGGTTTATGGCTGATCCATCTACACCTCCACCATCACAAAGTGAGGACCAAAGTCAATCATCACAAAGTGAGGACCAAAGTCAATCATCTACTCGACCCAAGTGTAGACGTGCTACTAGGCTTAGAGACTTGACTATTAGTCGTAGTGCTGATCAAAGATTGCCCATTCAATTTGATACGAGTACAGGAAAAGTTTTTGGAGACAACCGTGCAAGATTCACTAGCTTTGTGGCCTTACTTGGTAGAAGTAAGGTTAGTATTCTTATTGACGATTGGGACCATGTTCTTGAAGAAGTGAAGAACCAAATATGGCAAACGATCATGCTAACATATGATGTCCCAAACACCATCTTGTTGAGAACTAAATGGATATCATATGCTGGGCAACGGTGGAGGTGTTTCAAGACTGACCTTACTAGTCGGTATATTTATGGTAAGTTAAGTCACAAGAATCCTTGTGAGATTTATGAGTTCCTTGATGAGGAAACATGGCAGGCTTTTCGAGACAAACGATTAGACCCTACCTTTCAGGAAAAGAGAAAAGCTGCACAGGACATGGTGAAAAAAAATCTCCACCCACACAGATTGTCTCGTGGGGGATATCATAGGTTAGAGGAGATTATGATCCGTGAGGCCTCTTCCTTAGCTACCGATGATCGGTTAGATTTGAGTTTGATTTCTCCACCTCCACGTCATGAGAAATGGAAGAGAGCTCGCACTAAGCCAACAGGAGAATACATTTCTGAAGAAACTCGACTTGTAGCGGAGAGGATTGATGACTTAGTGGAAAAAAGCTCTCAAGGTTTATTCACTCAACAAGGTAGAGATGACATATTAGCTACTGCCATTGGACGTCCTGAGAAGCCAGGATATGTCCGTGGTGTTGGAGGAGGGGTAGGCATCAAACAATTCTTTGGTGGTACTACTCGAAGGGTTACTTTAGCACAACTTGCTGAATCCGATAAGAAGGTTCTAAGAAATGAGTTTAAGAAAGAGTTGTTTCCAGAATTGAGAGATGAGTTATTGTCAGAAATCAAATCTGAGATAGCATCCTTAGGATTGGCTATTCAAGGTCCACCAAAGGGGACTCCCCCGATTGTTGCTAGCACAAAGGGGAGTTGTCATCTTCCTGAGGAATCAGAGGATGGTGTTGATGTCCCTGTTGATTGTGAGTTGTATGTTGATGATCCCCCTGGGCATTTGGTGGCCTTAGGTAAAATATATAATTTGGGAAACATCATCCACCATGAGACTATTAAAGATGACATGTTGCGAGTGGTGGTGGTAGATATTAAAGATTGTTCTGCTTGTGTTCCTGTGCCTAGTGAGGAGGTTCAAACAGTGGGACAAGCACCAGAGAATTTTGTCATTTGGCCATCCAGATTGACAAAGCCAATTTTAGACATTTCTAGGAAGACAAACATTGTTACACCTTCACAACCACAATTGTCTCCTTTACAACAACTTGGTGTAAAGGTAGTGACAATGGGGAATAAAACTATTGAGATAGATATGCCTCTTGAACTGACATGCAAGACTGCCACCACCACTTTATCTATATGTAATAGGGATATTTGTGAAATTGTCTTTGGTAATGATCTCTCTACAATAGTTCTACAAGTTTGGAATTTGTATTTGTATCACCTTAGCATCGAGAGAAAGAATGCTACTATCTATGGATTTCTTGACCCTGTTATCATTCAAAGGGTAGGAAATAAATCAAAGGAGATGCAAAAATACTTAACAGAGATGTTTGAGAAAGCTAGTAAAGAGGTTTATTTAGCACCTTACTTGCATAAGGGTCATTGGCAATTGATAGTAATTGTTCCAAATCGTTCTCTTGTAGTTCTCTTATGTTCCTTGCATAAGAAAGCTAACACATTGTCCATCAAAAATATGTTAGAGATGTCTTTGGAAGCTTATTCAAAGTTGCGGGGTATTCCATCTGGATCTAGGAAAAAGATGCAAATAGTGACACCTAATTGTCGACGTCAATTGGACAGCTATGAGTGTGGGTATTATGTAATGAAGCACATGCACACCATTATTTGTACAAACATTACTGATTCATGGGATAAGATTTTTATTGATTCATCTTCAATGGAAGCTCCAATCATTGAAGACATTAGAATTAAGTGGGCTTCTTTTATTTTAAGTGTTAGTAAATTGTAG 3378 0.4186 MDPPTGPPRKKRKMSKSKGIPSFDSHRFLTEDHQQWYAVVENRNLLPERKVVLQTGEHEEFQQELKRRKWIKLTKYAAHANVAVVKEFYANAMLLKAGDPTFKSFVRGKEISYSGRVINHFLGTELNLGPSGCQYVEWCNKKKDYLKVAEKLCKRGADYVTSAAGHKRRILRGDLVPLAQIWTSFLHSNISPCSHTSDITERRSQMVYAIMAGLSMDVGAIIAQEIHLTANSGSTGQLSFPSLITELCRRAGVDVSEPPFQKPRQPINAQFILKNCMGSETRAPLVRAAPPAVPGSIPHRLELLEIDQQLIHQKLDALYRSQVLMMSSIRSLIPGISQDSFHFPSAEEFDSNVAWPKLPEKQDSIEETDEHAVEKEVDEPAEEEGVRMLLMLRKKRMSSLETRFMADPSTPPPSQSEDQSQSSQSEDQSQSSTRPKCRRATRLRDLTISRSADQRLPIQFDTSTGKVFGDNRARFTSFVALLGRSKVSILIDDWDHVLEEVKNQIWQTIMLTYDVPNTILLRTKWISYAGQRWRCFKTDLTSRYIYGKLSHKNPCEIYEFLDEETWQAFRDKRLDPTFQEKRKAAQDMVKKNLHPHRLSRGGYHRLEEIMIREASSLATDDRLDLSLISPPPRHEKWKRARTKPTGEYISEETRLVAERIDDLVEKSSQGLFTQQGRDDILATAIGRPEKPGYVRGVGGGVGIKQFFGGTTRRVTLAQLAESDKKVLRNEFKKELFPELRDELLSEIKSEIASLGLAIQGPPKGTPPIVASTKGSCHLPEESEDGVDVPVDCELYVDDPPGHLVALGKIYNLGNIIHHETIKDDMLRVVVVDIKDCSACVPVPSEEVQTVGQAPENFVIWPSRLTKPILDISRKTNIVTPSQPQLSPLQQLGVKVVTMGNKTIEIDMPLELTCKTATTTLSICNRDICEIVFGNDLSTIVLQVWNLYLYHLSIERKNATIYGFLDPVIIQRVGNKSKEMQKYLTEMFEKASKEVYLAPYLHKGHWQLIVIVPNRSLVVLLCSLHKKANTLSIKNMLEMSLEAYSKLRGIPSGSRKKMQIVTPNCRRQLDSYECGYYVMKHMHTIICTNITDSWDKIFIDSSSMEAPIIEDIRIKWASFILSVSKL* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1853 1125 MobiDBLite consensus disorder prediction 404 436 - -
Vra6g1853 1125 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 397 1074 - -
Vra6g1853 1125 Pfam Ulp1 protease family, C-terminal catalytic domain 990 1104 IPR003653 GO:0006508|GO:0008234
Vra6g1853 1125 ProSiteProfiles Ubiquitin-like protease family profile. 920 1084 IPR003653 GO:0006508|GO:0008234
Vra6g1853 1125 SUPERFAMILY Cysteine proteinases 921 1121 IPR038765 -
Vra6g1853 1125 PANTHER OS10G0338966 PROTEIN-RELATED 397 1074 - -
Vra6g1853 1125 MobiDBLite consensus disorder prediction 1 23 - -
Vra6g1853 1125 MobiDBLite consensus disorder prediction 364 385 - -
Vra6g1853 1125 MobiDBLite consensus disorder prediction 404 440 - -
Vra6g1853 1125 Pfam Putative plant transposon protein 66 254 IPR046796 -
Vra6g1853 1125 Gene3D Adenoviral Proteinase; Chain A 906 1121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1853 Vra-Chr6 35146547 35156210 Dispersed/Transposed