Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1852 ATGGCTTTCCCTCAGCACCACTTCCAACGGCACTACCAAACCCAACAACAACAGCCACAGACCAAACCCTTCAGAAATCTGCAAGCAATAGATGGTCAGATTCCACAGCAGGTGGCGTTTTACAACCCTACTGATTTGCAAGATCAGTCCCAGCATCCACCCTACATACCTCCCTTTCATGTTGTTGGGTTTGCTCCGGGTCCTGTTCCTCCTGCTGATGGCAGTGATGGTGGAGTTGATTTGCAATTGCAATGGAATTATGGTTTGGAGCCAGAGAGGAAGAGACTTAAAGAACAGGACTTTTTGGAGAACAATTCTCAGATATCTTCTGTTGATTTTCTCCAACCACGATCAGTTTCAACTGGGTTAGGCTTGTCACTCGACAATACTCGCCTGACATCCACCGGAGACTCAGCTTTGTTGTCGCTCATTGGCGATGACATTGAGCGTGAGTTGCAGCAACAGGATGTAGAGATAGATAGATTTCTCAAAGTGCAGGGTGAAAGGCTGCGTCAATCAATCTTAGAAAAGGTTCAAGCAACACAGCTTCAGAGTGTCTCACTCATAGAAGACAAAGTACTTCAGAAACTTCGTGAGAAAGAAGCTGAGGTTGAAAGCATCAACAAGAGGAATATGGAACTTGAAGATCGAATGGAGCAGTTGACTGTGGAAGCTGGTTCATGGCAGCAGCGAGCAAGATACAATGAAAACATGATTGCTGCTCTCAAGTTCAACCTTCAGCAAGCATATGTCCAAAGTAGAGATAGTAAAGAAGGATGTGGTGACAGTGAGGTTGATGACACGGCTTCTTGCTGCAATGGCCGTACCCTTGATTTTCATCTGCTTTCTAAGGAGAACACTGATATGAAAGAGATGATGACATGCAAGGCTTGCAGAGTGAATGAAGTGACCATGGTTTTGTTACCTTGTAAGCATCTTTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGTTTCTGTCCTCTATGTCAATCCTCCAAATTTATAAGCATGGAGGTCTACATGTAA 1026 0.4435 MAFPQHHFQRHYQTQQQQPQTKPFRNLQAIDGQIPQQVAFYNPTDLQDQSQHPPYIPPFHVVGFAPGPVPPADGSDGGVDLQLQWNYGLEPERKRLKEQDFLENNSQISSVDFLQPRSVSTGLGLSLDNTRLTSTGDSALLSLIGDDIERELQQQDVEIDRFLKVQGERLRQSILEKVQATQLQSVSLIEDKVLQKLREKEAEVESINKRNMELEDRMEQLTVEAGSWQQRARYNENMIAALKFNLQQAYVQSRDSKEGCGDSEVDDTASCCNGRTLDFHLLSKENTDMKEMMTCKACRVNEVTMVLLPCKHLCLCKDCESKLSFCPLCQSSKFISMEVYM* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1852 341 Coils Coil 190 231 - -
Vra6g1852 341 Pfam Zinc finger, C3HC4 type (RING finger) 293 331 - -
Vra6g1852 341 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Vra6g1852 341 MobiDBLite consensus disorder prediction 1 22 - -
Vra6g1852 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 341 IPR013083 -
Vra6g1852 341 MobiDBLite consensus disorder prediction 8 22 - -
Vra6g1852 341 PANTHER F2G19.2 1 341 - -
Vra6g1852 341 PIRSF SBP1_RNase_bind 3 341 IPR017066 -
Vra6g1852 341 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 341 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1852 Vra-Chr6 35143145 35145371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1852 295 331 Miscellaneous Gene Families AT4G39050 45.946 4.32e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1852 6 35143145 35145371 Vra6g1852 6 35143145 35145371 ECH