Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1851 ATGGCTGGTGACATGCACCAACCACAATCCTCTCATGGCAGAACCTGCCCTCCTAATTCAGAAGACTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCACACTAGGAATGGACCCTAATCATTCTGCTTCTGATTTCATCCCAAACAACCTCAACAACAACAACAACCCTGTTCCTTCCTCTCCCTCAACTTTTCATTTCTCTCACCCCCATCACTACATCCCTGCAACTGATGCCAACACCTTCAAACAACACGACAATAATCACAAGCCTGATTTCACTTCTTCTTCTGAGAAGAGTGTGGAGGCAACGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAATTCCATAATTTGTCTGAAAAGAGAAGAAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCGAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGAACTAAGACCTGTGATAATGCCTCAGACTGGGTTGAACCTTGATGAGAGTGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAATGAAGAAAGCTTGGTTCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAGATCAGTCCCATGTTGTACCCTCAGTGACAAGTTTAGCCACCTCCAATGCCCCGTCCACTTTTCATCCTTCTATTAAGGATACACTCTACGACAACATGCCCCAACTGTTTATGGATGCACCAAAGATTGGAAAGGACCCTTCTTCAGACTTGTCTTGA 882 0.4365 MAGDMHQPQSSHGRTCPPNSEDFSTFFNQLLHNPPTLGMDPNHSASDFIPNNLNNNNNPVPSSPSTFHFSHPHHYIPATDANTFKQHDNNHKPDFTSSSEKSVEATKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGELRPVIMPQTGLNLDESDGLQNSTSAIASSSNEESLVRHAFSFPKQCSISDQSHVVPSVTSLATSNAPSTFHPSIKDTLYDNMPQLFMDAPKIGKDPSSDLS* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1851 293 MobiDBLite consensus disorder prediction 45 69 - -
Vra6g1851 293 Gene3D - 115 179 IPR036638 GO:0046983
Vra6g1851 293 SMART finulus 126 175 IPR011598 GO:0046983
Vra6g1851 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Vra6g1851 293 MobiDBLite consensus disorder prediction 1 132 - -
Vra6g1851 293 PANTHER TRANSCRIPTION FACTOR SPATULA 21 269 - -
Vra6g1851 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 180 IPR036638 GO:0046983
Vra6g1851 293 MobiDBLite consensus disorder prediction 118 132 - -
Vra6g1851 293 MobiDBLite consensus disorder prediction 8 32 - -
Vra6g1851 293 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 269 IPR031066 -
Vra6g1851 293 CDD bHLH_AtPIF_like 120 182 - -
Vra6g1851 293 Pfam Helix-loop-helix DNA-binding domain 124 170 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1851 Vra-Chr6 35134959 35138556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1851 120 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 52.326 2.37e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra6g1851 HLH 3.4e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1851 6 35134959 35138556 Vra6g1851 6 35134959 35138556 ECH