Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1850 ATGCAAGGGCAGAGAGGTACAATTGGTTCCTTGCAAGAAACCATAGAATTTGATACATCAAGTACTGCTGCGGTTGATCAACATATTTTCTGGAACAATATGCGAAATCCCGCAGAAAACCATTTTGCACTTCCCCCCAGTGATTTGAACCCGTCTTACGCAAATCCCATAAACCATGAATGGCAGAACCTAAGTGGATGGAGCTTAGGTGAGCCAAGTTCCAGCAATACTCAGAATGAGGTTACTAACAATGAGCAGAAAGGAGAGCTAGGATTATCATCTTCAATAAGTTCTGGTGCTATAGCTGGTCCAAGACTTGAAGAAAGGCGCTTTGAACCAAACAATACTTTTTCGTTGGATAATGTCAATACAAGTTCCATGTATATGCGCAGCTCCAATTCTCACTTGGTGCCTCAGAATCTCAACCTAAATGCAAGCTTAGCAGATAGTGGCACTGATAATGGCTTTCGTGTGGAACATCCTCCTAACTTGAACAAGTCTAGTGGACCGGTAAATGAGCATATTCAACCTTCAATTGGTTCTGGTCCTTTTCTGCTTCCTTCTGGCACTAATGGCTTTTTGGTTGAGGATACTGATGGTAGGCCTGGTTGTTCTCTGGACACACGCCGTGTATCATGTAAAAGAAAGGCTGTTGAACGAAGTGTTGGACAATCTTCAGGTGGCGGAAGTTCTAGCTATAGTCAGCATACAGATGGTAATACTTGGAACACTCTTCCTACTCAGGATTATGGGGGAAGCAGTTTTAACAGATCTGCCTCAACAGAACAGGTGAATGCGAGACTCGGTCTGAGTACTGGGGATGGAGCAGCTGAGAGCATTCCTTGGTCAAATGTTGCAGCAAGCTCTGAAAGCTTCCACAGAAATTTTCGTGTGAGGATAAATCCTTCAAGTCAACAAATTTCGGTTCCACCCCCTGCAATCTCAAGTGGGAGTGTTCTTAGAAATTCTGGTGTCTCTTCGTCCTCTCCAATGTTGCAACGGTTTCATGCTGTTGATAATTCTCTGGACTTGAGGTCAGCACCACCTGTTGTTGATACTATGGTTCCCCAAAGCCAGCCACTTGTTATTCATGTTCCAGCTTTACCAAGGAATGTGCAGCCATTCAGGTGGAATGGAGGTTCCAGCTCAACCAACAATCATCCATCAAACACAGTCATATGTGCAGATAGAAATAGTTTGCCAAACGAGGAAGCAAGTTCAAGAAGTGTGCCGAGAAACATTGTAGAATACCCTATGTTTGTGCCTGCAACCAATTTAAGAAACGTGGTTAGAAATCCGGCTAGAGCTTCACACAGTGCAAATTTAAGTATCCCAGGAAATGTTGGTTCTTCATCGAGGGCAGGCTCAAATTCAGCTGTCAACCCTCCGTCTGCTCCGGCGTGGGTTTCTCGCCCTAATCCTCAGCAGTATCCTCGCAGGTTATCCGAGTATGTTCGTCGGTCCTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGCAACAATTATGCTTCCTTCCGTGGCCCTTCTTCTTCATCTGGGGTAAACCCATTTGAGAGGCAAGGTGATAGTGAATTTGGAATTCAGTATTCATTACGATCTTTGGCTGCTGGTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTATTGGGTCTCATGCGTAGGGGTGGGAACCTACGATTTGAGGATGTTATGATCCTCGACCATTCAGTGTTCGCTGGAATTGCTGATATGCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTACGAGGAGCTACTTGCTTTGGAAGAACGCATTGGAAATGTGAGCACTGGGTTGAGTGAGGAGACCATATTGAAACACATGAAAAATAAGAAGTATTCAGCTGAACCAGGTTCTCAGCAGGAGGCAGAACCCTGTTGTGTTTGTCAGGAGGAGTACAAAGATGGAGATGATTTAGGATCACTGGATTGTGGGCATGATTACCATACCGAATGTATTAAGCAGTGGTTAATGCATAAGAATTTGTGTCCCATTTGTAAGACAACAGGGTTGGCAACATGA 2070 0.4454 MQGQRGTIGSLQETIEFDTSSTAAVDQHIFWNNMRNPAENHFALPPSDLNPSYANPINHEWQNLSGWSLGEPSSSNTQNEVTNNEQKGELGLSSSISSGAIAGPRLEERRFEPNNTFSLDNVNTSSMYMRSSNSHLVPQNLNLNASLADSGTDNGFRVEHPPNLNKSSGPVNEHIQPSIGSGPFLLPSGTNGFLVEDTDGRPGCSLDTRRVSCKRKAVERSVGQSSGGGSSSYSQHTDGNTWNTLPTQDYGGSSFNRSASTEQVNARLGLSTGDGAAESIPWSNVAASSESFHRNFRVRINPSSQQISVPPPAISSGSVLRNSGVSSSSPMLQRFHAVDNSLDLRSAPPVVDTMVPQSQPLVIHVPALPRNVQPFRWNGGSSSTNNHPSNTVICADRNSLPNEEASSRSVPRNIVEYPMFVPATNLRNVVRNPARASHSANLSIPGNVGSSSRAGSNSAVNPPSAPAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSSNNYASFRGPSSSSGVNPFERQGDSEFGIQYSLRSLAAGGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSVFAGIADMHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKHMKNKKYSAEPGSQQEAEPCCVCQEEYKDGDDLGSLDCGHDYHTECIKQWLMHKNLCPICKTTGLAT* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1850 689 ProSiteProfiles Zinc finger RING-type profile. 642 683 IPR001841 -
Vra6g1850 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 686 IPR013083 -
Vra6g1850 689 SMART ring_2 642 682 IPR001841 -
Vra6g1850 689 MobiDBLite consensus disorder prediction 437 475 - -
Vra6g1850 689 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 688 - -
Vra6g1850 689 MobiDBLite consensus disorder prediction 64 96 - -
Vra6g1850 689 MobiDBLite consensus disorder prediction 495 520 - -
Vra6g1850 689 CDD RING-H2_TTC3 641 683 - -
Vra6g1850 689 MobiDBLite consensus disorder prediction 215 258 - -
Vra6g1850 689 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 688 IPR045191 GO:0061630
Vra6g1850 689 MobiDBLite consensus disorder prediction 495 521 - -
Vra6g1850 689 SUPERFAMILY RING/U-box 633 685 - -
Vra6g1850 689 MobiDBLite consensus disorder prediction 223 258 - -
Vra6g1850 689 MobiDBLite consensus disorder prediction 146 170 - -
Vra6g1850 689 Pfam Ring finger domain 642 683 IPR001841 -
Vra6g1850 689 MobiDBLite consensus disorder prediction 437 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1850 Vra-Chr6 35116998 35122129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1850 1 689 C3H Transcription Factor Family AT2G15530 33.289 7.78e-88 288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1850 6 35116998 35122129 Vra6g1850 6 35116998 35122129 ECH
Vra6g1850 6 35116998 35122129 Vra5g1503 5 21705966 21712677 PCT