Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1846 ATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTCGGCTGCAAACGCTTACGACCCCTTGCTCCCAAGCTTTCCAACACTGACTCCACTACCTCCATCACTTCGCCTCCTGTCACAACTTTCGACCTCAAGAGCTTCATCAAACCAGAAAGCGCCTCCAGAAAACTTGGATCCTCTGATGACAATAAGAGAGACCCTTCTTCACCTCAGGGCCAGGTGGAAACGCATATTCCAGGAGGGACGCGGTGGAATCCGACGCAGGAACAGATAGGGATACTGGAGATGCTGTATAGAGGAGGGATGCGAACACCGAATGCTCAACAGATAGAGCAGATCACAGTCCAACTAAGCAAGTACGGGAAGATCGAAGGGAAGAACGTGTTCTATTGGTTCCAAAACCACAAGGCACGCGAGAGACAGAAGCAGAAGCGTAACAACCTCGGCCTTGCTCATAGTCCTCGTACTCCCACCACCCTAGTGTCACCTTCCTTCAGTTGTAGTGTAATAACCTCTTTGGACACGACAAAACGGGGGGAGGTGGTGGAAAGAGATGAAGAAGATAGCCCTTTGAAGAAGTGTAGGAGCTGGGCATTTGAGTACTTGGAAGACCAAAGTTGGTCATCATGGAAAGAGGAGGAACACAGAACTCTGGAGCTTTTCCCGTTGCACCCGGAAGGCAGATGA 705 0.5121 MKVHQFARGFWEHEPSLTLGCKRLRPLAPKLSNTDSTTSITSPPVTTFDLKSFIKPESASRKLGSSDDNKRDPSSPQGQVETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNNLGLAHSPRTPTTLVSPSFSCSVITSLDTTKRGEVVERDEEDSPLKKCRSWAFEYLEDQSWSSWKEEEHRTLELFPLHPEGR* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1846 234 CDD homeodomain 88 149 IPR001356 GO:0003677
Vra6g1846 234 Pfam Homeodomain 88 147 IPR001356 GO:0003677
Vra6g1846 234 SUPERFAMILY Homeodomain-like 87 151 IPR009057 -
Vra6g1846 234 MobiDBLite consensus disorder prediction 57 92 - -
Vra6g1846 234 MobiDBLite consensus disorder prediction 70 92 - -
Vra6g1846 234 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 234 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Vra6g1846 234 ProSiteProfiles 'Homeobox' domain profile. 93 148 IPR001356 GO:0003677
Vra6g1846 234 Gene3D - 87 154 - -
Vra6g1846 234 SMART HOX_1 85 152 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1846 Vra-Chr6 35076006 35077516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1846 1 178 Wox Gene Family AT1G46480 61.170 2.09e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra6g1846 Homeodomain 1.5e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1846 6 35076006 35077516 Vra6g1846 6 35076006 35077516 ECH