Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1845 ATGTTAGTCATGGAAGATAGGGATCACTGTTGTTCCAACGATTCAACCGTCACCAACAGAAGAAGAAGAAGAAGCAGAAGCCCGACAACAACCTTGGAGAAATCGAAGAAGCAGCGCCGCGAGAAACCGATGAAACCGTACCGAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATCAGAGAGCCGAACAAGAGGTCAAGGATTTGGTTGGGTTCTTACACGACGCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTTTTCTACCTCCGAGGTCCCTCCGCGCGCCTCAATTTCCCCGAACTTTTGTTCCAGGACGAGGTCGACGGCGCCAACGATGACGATTCCGTGAACATGTCCGCTGATTCCATTCGCCGCAAAGCCACGCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCACCATCACGCGCCCTCGCACAACCCCACTCAAATCTCTCTCAAACCCGACTTGAACGAGTTCCCAAAACTCGAAGACCTTCAAGATTGA 525 0.5524 MLVMEDRDHCCSNDSTVTNRRRRRSRSPTTTLEKSKKQRREKPMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDEVDGANDDDSVNMSADSIRRKATQVGARVDALQTALHHHAPSHNPTQISLKPDLNEFPKLEDLQD* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1845 174 MobiDBLite consensus disorder prediction 1 40 - -
Vra6g1845 174 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Vra6g1845 174 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Vra6g1845 174 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Vra6g1845 174 Pfam AP2 domain 47 95 IPR001471 GO:0003700|GO:0006355
Vra6g1845 174 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Vra6g1845 174 MobiDBLite consensus disorder prediction 147 174 - -
Vra6g1845 174 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Vra6g1845 174 PRINTS Ethylene responsive element binding protein signature 85 105 IPR001471 GO:0003700|GO:0006355
Vra6g1845 174 MobiDBLite consensus disorder prediction 1 44 - -
Vra6g1845 174 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Vra6g1845 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 172 - -
Vra6g1845 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1845 Vra-Chr6 35049188 35050335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1845 45 148 AP2-EREBP Transcription Factor Family AT5G67190 70.370 1.24e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra6g1845 AP2 3e-11 CL0081