Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1843 ATGAACAATTCGCTTTTTCTCCACAACGCAAACCCAATCCACTTCACTTTCCACTCTGCATTTTCACAAACACAACGCAGGCACGTTGCTTCCAACAAGCACTTATCTCAGCGTTACCCACGCATCCAATGCTTCTGCGTCGAAATCGACATGGTGAAGAACTCCCAAGGAATTTACGCCCCCAAAAGCGACAAGGTCGTTGTTCTCTGGGACCTCGACAACAAGCCACCTCGTGGGCCTCCATACAACGCCGCCGTTTCGCTCAAAACCCTCGCCTCCCGCTTCGGCGAGGTGACTGACTTCTCCGCCTACGCTAACCGCCACGCCTTCGTCCACCTCCCCCAGTGGGTCCTACACGAGCGCCGGGAACGCAGGAACCTCGACATCCTCGAACGGAAGGGTGTGGTCACACCCTCGGAGACCTACACGTGTGGGGTGTGTGGGCGCAAGTGCAAGACCCACATGGACCTGAAGAAGCACTTCAAGCAGCTGCACCAGCGCGAGCGTGAGAAGAAGCTGAACCGGTTGAAGTCGCTGAAGGGGAAGAAGAAACGGGACCGTTTCAAGGAAAGGTTTTTGCGCGGGAATCATAAGTATAATGAGGCGGCGAGGACGCTACTGGTTCCGAAGGTGGGGTACGGGCTGGCGGCGGAGCTGCGGCGGGCGGGGGTGTTTGTTAAGACGGTGGAGGATAAACCGCAGGCGGCGGATTGGGCCCTGAAGAGGCAGATGGTTCATTCGATGAGTAGAGGGATTGATTGGCTGTTTTTGGTTTCGGATGATTCGGATTTTTCGGAGATGTTGAGGAGGGCGAGGGAGGCGGATTTGGGGACCGTGGTGGTGGGTGATTGGGATAGGGCTTTGGGGAGGCATGCGGATTTGTGGGTGCCATGGAGTGGGGTTGAGAATGGGGAAGTGGAGTTAGTGCCCGAGATGAAGAAGAGAAGAGAACATGGTTTTCAGAATGATGACGATGATGATGATGATCACCATGATCGTGGTGATTGGGGAGGAGGTTTGAATGAGGATGAGGATGAAGATGCGGGAAACTATTATTAGATGATGAAGAAGAAGAGGAAGAAGAAGATGGATTGTATATACTTTGATTCTTTTTTGGATGGAAAACAATTTGCCACCGCAATTTCGGCTGCAATTGTGACTGCACCTATCTCATTTGTTTGTAGTTTCTTGCAATGTGAAGAACTGCAACGTCAAGATGTTTGGTATGTCTGGGGCTGCTGCTGTTTTTGTTTGTCCGATTTTGTGATATCAAGAAAATGCAACAAAACTGTGACAGGCACTAGAATTTGA 1311 0.5156 MNNSLFLHNANPIHFTFHSAFSQTQRRHVASNKHLSQRYPRIQCFCVEIDMVKNSQGIYAPKSDKVVVLWDLDNKPPRGPPYNAAVSLKTLASRFGEVTDFSAYANRHAFVHLPQWVLHERRERRNLDILERKGVVTPSETYTCGVCGRKCKTHMDLKKHFKQLHQREREKKLNRLKSLKGKKKRDRFKERFLRGNHKYNEAARTLLVPKVGYGLAAELRRAGVFVKTVEDKPQAADWALKRQMVHSMSRGIDWLFLVSDDSDFSEMLRRAREADLGTVVVGDWDRALGRHADLWVPWSGVENGEVELVPEMKKRREHGFQNDDDDDDDHHDRGDWGGGLNEDEDEDAGNYY*MMKKKRKKKMDCIYFDSFLDGKQFATAISAAIVTAPISFVCSFLQCEELQRQDVWYVWGCCCFCLSDFVISRKCNKTVTGTRI* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1843 435 Gene3D - 59 299 - -
Vra6g1843 435 PANTHER - 46 326 - -
Vra6g1843 435 MobiDBLite consensus disorder prediction 318 338 - -
Vra6g1843 435 Coils Coil 162 182 - -
Vra6g1843 435 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Vra6g1843 435 MobiDBLite consensus disorder prediction 318 342 - -
Vra6g1843 435 PANTHER OS06G0166200 PROTEIN 46 326 - -
Vra6g1843 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Vra6g1843 435 CDD PIN_LabA-like 152 283 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1843 48 325 C2H2 Transcription Factor Family AT5G52010 72.183 6.12e-151 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra6g1843 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1843 6 35026426 35027983 Vra6g1843 6 35026426 35027983 ECH