Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1840 ATGGTGGAAGCAGGTGAGGATTGTTGCGTGAAGGTGGCGGTCCACGTGCGACCGCTCATCGGCGAGGAGAAGGTTCAGGGATGCAAGGATTGCGTGAGCGTTGTTCCAGGGAAGCCTCAGGTACAAATTGGTGCCCATTCCTTTACATTTGATCATGTTTATGGGAGCACTGGGTCTCCCTCATCTGCCATGTTCGATGAATGTGTTGCTTCCCTTGTCGATGGTTTGTTCCAAGGATATAATGCTACTGTTCTCGCATATGGTCAGACAGGTTCGGGGAAAACTTACACCATGGGAACTGGCTTTAAAGATGGTTGCCAAGAGGGTATAATACCTCTAGTCATGAGTTCTTTGTTTGACAAAATCAAGACCTTAAAGCATCAGATCGAATTTCAGTTGCATGTTTCCTTTATAGAGATTCTTAAAGAAGAAGTAAGAGACTTGCTGGACCCATCATCTATGAACAAACCAGAAACTGCAAATGGACATGCAGGGAAAGTGACTATTCCTGGGAAACCACCGATACAAATTCGCGAGTCACCAAATGGAGTCATTACTCTAGCAGGATCTACTGAAGTCAGTGTTACAACTCTAAAAGAAATGGCTGCTTGCCTAGAACAAGGATCATTGAGTAGAGCAACTGGGAGCACAAATATGAACAACCAATCCAGTCGTTCACATGCCATCTTCACCATCACTTTAGAGCAAATGCGGAAGTTCAATAGTCCTGGTGAGATCAGTTTAAATGATACAGTGAATGAAGAATATCTCTGTGCCAAGTTGCACTTGGTAGATCTTGCTGGATCAGAACGAGCTAAAAGAACAGGGTCTGATGGTCTGCGTTTTAAGGAAGGAGTTCACATTAACAAAGGTCTTCTAGCACTTGGTAATGTTATTAGTGCACTTGGTGATGAAAAGAAGAGAAAAGAAGGAGTTCATGTTCCTTATCGGGACAGTAAACTAACTAGGCTTTTGCAGGATTCACTTGGCGGTAACAGCAGAACTGTTATGATAGCCTGCATAAGTCCTGCTGATATTAATGCTGAGGAAACCCTTAACACTTTGAAGTATGCAAATCGTGCACGCAACATCCAAAACAAGCCTGTTGTCAATAGAGATCCCATGTCCAATGAAATGCTAAAAATGCGACAACAACTAGAGTATTTGCAAGCAGAACTTTGTGCTCGCTCTGGTGGCTCTTCCGAGGAAGTTCAGGTCCTCAAGGAAAGGATTTCTTGGCTTGAAGCAGCTAATGAGGATCTTCGTTGTGAACTTCATGAATACCGCAGTAGATGCTCTGTTGTAGAACAATGTGAAAAGGATGCTTATGATAATAGCACATGTAATGTAAAGACTGATGGTCTTAAGAGGGGCTTACCTATTAAAAACACTGATTATCCGATGAGTGAAACAACAGGCGATTCAAGGGAAATCGAAGAAGTAGCAAAAGAGTGGGAGCATACTCTTCTGCAAAATAGTATGGATAGAGAGTTACATGAATTGAATAAACGTTTGGAGCAAAAAGAGTCTGAGATGAAGCTTTTTGGGATATCTGATGCTGAAGCACTCAAGCAGCACTTCGGAAAGAAGATAGTGGAACTGGAAGATGAGAAAAGAGTTGTTCAGCGAGAGAGGGATCGTCTTTTGGCCGAAGTTGAAAATCTTGCTGCCAATTCTGATGGACAAATGCAGAGATCAGAGGATATCCATGCCCAAAAACTGAAAACACTTGAAGCCCAGATTCTTGATCTGAAGAAGAAACAGGAGAGTCAGGTCCAGCTTCTGAAGCAAAAGCAAAAAAGTGATGAAGCAGCAAAGCGATTGCAAGATGAAATACAATCCATAAAGGCCCAGAAGGTTCAACTGCAACATAGGATTAAACAAGAGGCTGAACAGTTTCGACAATGGAAGGCTTCTAGAGAAAAAGAGCTCTTGCAATTAAAGAAGGAAGGAAGGAGAAATGAGTTTGAACGGCATAAGCTACAAGCATTGAATCAGCGTCAAAAAATGGTCCTCCAGAGGAAGACTGAAGAAGCTGCAATGGCCACCAAAAGGTTAAAGGAGTTGCTTGAAGCTCGTAAATCTTCCAGCCGAGACACTTTGGTTGCAATGAATGGAAGTGGAACGAATGGACAGAGCAATGAGAAGCCCTTACAACGGTGGCTTGATCAAGAGCTGGAAGTCATGGTAAAAGAGCATGAAGTTCGATTTGAGTATGAGAAGCAAAGTCAAGTGCGAGCTGCCCTTGCGGAGGAGTTGGCCATGCTAAAGCAAGTAAACGGGTTTGCTGCCAAGGGTCTCAGTCCTCCAAGAGGAAAGAATGGATTTGCTAGAGCATCCTCCATGTCACCAAATGCAAGAATGGCCAGAATAGCTTCACTTGAGAGCATGTTGAGCATATCATCTAATTCACTTGTGGCAATGGCTTCTCAACTTTCTGAGGCAGAAGAACGGGAAAGGGCCTTCACCAACCGTGGACGCTGGAACCAGCTGCGCTCAATGGGAGAAGCCAAGAATTTGCTTCAATATTTGTTCAATTCTGTTGGAGATGCTAGGTGCCAACTGTGGGAGAAGGACACCGAGATCAGGGAAATGAAAGATCAAATCAAAGAACTTGTAGGTCTATTACGGCAAAGTGAAATCAAGAGAAAGGAAGCTGAGAAGGAACTAAGAGTGAGAGAGCAAGCTATTGTAACCACATTGGCTACGCCAATTTCTGGAAACTCTCCAAATTCATTGAAACATAGTGCAGACGACACGAAGGAACCTTTATCTCCGGAATCTGTGCCAGTACAGAAACAGCGCAAATATATGCCGGGCATCACTAATGGCCAAGTGAGGGAATCAGCAACCTTTATAGATCAAAGTAGAAGGATGGTACCCATCGGGCAGCTGTCAATGAAAAAACTAGCAATTGTAGGACAAAGTTCTGGCAAGTTGTGGAGGTGGAAAAGAAGCCACCATCAGTGGCTACTGCAATTCAAATGGAAGTGGCAGAAGCCATGGAGACTTTCTGAATGGATTCGACACAGCGATGAGACAATCATGAGAGCAAGGCCACGTTCACAGGCTTTGCCATATGTCATGTGA 3090 0.4372 MVEAGEDCCVKVAVHVRPLIGEEKVQGCKDCVSVVPGKPQVQIGAHSFTFDHVYGSTGSPSSAMFDECVASLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGCQEGIIPLVMSSLFDKIKTLKHQIEFQLHVSFIEILKEEVRDLLDPSSMNKPETANGHAGKVTIPGKPPIQIRESPNGVITLAGSTEVSVTTLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKFNSPGEISLNDTVNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSNEMLKMRQQLEYLQAELCARSGGSSEEVQVLKERISWLEAANEDLRCELHEYRSRCSVVEQCEKDAYDNSTCNVKTDGLKRGLPIKNTDYPMSETTGDSREIEEVAKEWEHTLLQNSMDRELHELNKRLEQKESEMKLFGISDAEALKQHFGKKIVELEDEKRVVQRERDRLLAEVENLAANSDGQMQRSEDIHAQKLKTLEAQILDLKKKQESQVQLLKQKQKSDEAAKRLQDEIQSIKAQKVQLQHRIKQEAEQFRQWKASREKELLQLKKEGRRNEFERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKSSSRDTLVAMNGSGTNGQSNEKPLQRWLDQELEVMVKEHEVRFEYEKQSQVRAALAEELAMLKQVNGFAAKGLSPPRGKNGFARASSMSPNARMARIASLESMLSISSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGEAKNLLQYLFNSVGDARCQLWEKDTEIREMKDQIKELVGLLRQSEIKRKEAEKELRVREQAIVTTLATPISGNSPNSLKHSADDTKEPLSPESVPVQKQRKYMPGITNGQVRESATFIDQSRRMVPIGQLSMKKLAIVGQSSGKLWRWKRSHHQWLLQFKWKWQKPWRLSEWIRHSDETIMRARPRSQALPYVM* 1030
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1840 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 395 IPR027417 -
Vra6g1840 1029 Coils Coil 591 632 - -
Vra6g1840 1029 MobiDBLite consensus disorder prediction 903 931 - -
Vra6g1840 1029 CDD KISc_KIF4 8 365 - -
Vra6g1840 1029 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-LIKE PROTEIN 1 1028 - -
Vra6g1840 1029 MobiDBLite consensus disorder prediction 156 175 - -
Vra6g1840 1029 PRINTS Kinesin heavy chain signature 79 100 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1840 1029 PRINTS Kinesin heavy chain signature 217 234 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1840 1029 PRINTS Kinesin heavy chain signature 260 278 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1840 1029 PRINTS Kinesin heavy chain signature 314 335 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1840 1029 Coils Coil 672 692 - -
Vra6g1840 1029 Coils Coil 862 896 - -
Vra6g1840 1029 ProSitePatterns Kinesin motor domain signature. 259 270 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra6g1840 1029 Coils Coil 404 431 - -
Vra6g1840 1029 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 1028 - -
Vra6g1840 1029 Coils Coil 567 587 - -
Vra6g1840 1029 ProSiteProfiles Kinesin motor domain profile. 9 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1840 1029 Gene3D Kinesin motor domain 2 393 IPR036961 -
Vra6g1840 1029 SMART kinesin_4 7 372 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1840 1029 Pfam Kinesin motor domain 38 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra6g1840 1029 Coils Coil 517 558 - -
Vra6g1840 1029 Coils Coil 491 511 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vra6g1840 Vra-Chr6 34982437 34993287 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1840 10 390 Miscellaneous Gene Families AT5G06670 36.962 1.54e-54 201
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1840 6 34982437 34993287 Vra6g1840 6 34982437 34993287 ECH
Vra6g1840 6 34982437 34993287 Vra5g1490 5 21553755 21565229 PCT