Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1838 ATGAGTAGCATGCCTGCAAAATTGTTGGTCACAATTTTGTACATCTTCTTGGTGTCTCTTCCTGTGCACATGTCACCACATGATGTTAACACAGACACAAAAAATCTCAGAAGAAGTAGTAGCAGTGGCCACAGGAGCAAAGGTACTGGTGGTGGTGGCTCAGCCAAAGGTTGCAACCACAGCAACAACAATCTATTGGACACAAACACCACCCCATGTAAAAAATCTACCACCATTCAAGCAGTTCCAGCTTCACCCCCTCTTGTTTTTGCAGACCAAAGACTTCAAGTAGTGTATCCAGTAATCCAAAAGTTCAAATCTTCCATCACTTCTGATCCTCTGGGGGTGACCAACACTTGGGTTGGATCAGACATATGCAGCTACAGAGGCTTCTACTGTGACACTCCCCCTGACAATAGTTCTGCCACTGCTTTGGCCTCTGTTGACTTCAATGGTTTTCAACTTGCTGCTTCCACCCTTGATGGCTTCATTGATAGCCTCCCTGATATTGCTCTCTTCCATGCCAATTCCAACAGTTTTGGTGGCACAATCTCACCCCAAATAGCCAAACTTCCTTACCTATATGAGCTTGATGTTAGCAACAATCAGTTATCTGGTCCATTTCCCTCTGCTGTTCTAGGCATGACTGGTTTAACATTCTTGGACTTGAGGTTCAACTTTTTCTCTGGGGCAGTGCCACCACAGATATTCATACAGAACCTCCAAGTCCTTTTCATAAACAACAACATCTTCACTCAAGGGTTGCCAGATAACTTAGCCACCACTCAGATTCTCTTACTCACCTTAGCAAACAACAAGTTCATGGGTCCTATCCCAAAAAGTCTTCCCAAGGCTTTGGCCTCTCTAAGTGAAGTGTTACTACTTAACAACCAGTTAACAGGCTGTTTGCCTTATGAGATTGGTTTTCTTCAAGAGTCCACAGTGTTTGATGCTGGGAACAACCAATTGACAGGCCCTTTGCCTTTATCTTTGAGCTGTCTGCAGAAGGTGGAGGTGCTCAATTTGGGTGGTAATCTTTTGTATGGCATGGTGCCAGAAGTGGTGTGTGCAGGGTTGGTGAATTTGGTCAACTTTTCATTATCAAATAACTATTTCACACATGTGGGGCCATTCTGTAGGATGCTGATTCAGAGAGGGGTTCTTGATGTTAGCAACAATTGTATTCCTGATCTTCCCTTTCAGAGATCAGTGTTTGAGTGTGCTGAGTTCTTTGCAACACCAAGGATGTGTCCCTTCATCTGGTTTTATAGCCTCATCCCTTGTAAGCTTCCTTTTCAAAATCCCATTCCTTAG 1314 0.4399 MSSMPAKLLVTILYIFLVSLPVHMSPHDVNTDTKNLRRSSSSGHRSKGTGGGGSAKGCNHSNNNLLDTNTTPCKKSTTIQAVPASPPLVFADQRLQVVYPVIQKFKSSITSDPLGVTNTWVGSDICSYRGFYCDTPPDNSSATALASVDFNGFQLAASTLDGFIDSLPDIALFHANSNSFGGTISPQIAKLPYLYELDVSNNQLSGPFPSAVLGMTGLTFLDLRFNFFSGAVPPQIFIQNLQVLFINNNIFTQGLPDNLATTQILLLTLANNKFMGPIPKSLPKALASLSEVLLLNNQLTGCLPYEIGFLQESTVFDAGNNQLTGPLPLSLSCLQKVEVLNLGGNLLYGMVPEVVCAGLVNLVNFSLSNNYFTHVGPFCRMLIQRGVLDVSNNCIPDLPFQRSVFECAEFFATPRMCPFIWFYSLIPCKLPFQNPIP* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1838 437 MobiDBLite consensus disorder prediction 29 63 - -
Vra6g1838 437 Gene3D Ribonuclease Inhibitor 101 267 IPR032675 -
Vra6g1838 437 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 8 434 - -
Vra6g1838 437 PANTHER BNAA09G53810D PROTEIN 8 434 - -
Vra6g1838 437 Pfam Leucine rich repeat N-terminal domain 103 134 IPR013210 -
Vra6g1838 437 Gene3D Ribonuclease Inhibitor 268 407 IPR032675 -
Vra6g1838 437 SUPERFAMILY L domain-like 103 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1838 Vra-Chr6 34974464 34976473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1838 80 414 Leucine-rich Repeat extension Gene Families AT3G24480 41.791 1.91e-83 263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1838 6 34974464 34976473 Vra6g1838 6 34974464 34976473 ECH