Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1837 ATGGCTTCTGCTACTTCCGTCAACATGGCGATTATGCTGTTGTTCGCGCTCTTCGCGATTTCTTCAGCCTTGGATATGTCCATAATATCATACGACAACGCTCACCCAGACAAGGCCACGGGGCGCACCGAGGAGGAGGTCATGTCCCTGTACGAGGAGTGGCTCGTGAAGCACGGCAAATTGTACAACGCACTCGGGGAGAAGGATAAGAGGTTTCAGATCTTCAAAGACAACTTGCGATTCGTCGACGAGATAAACTCCGCCAACCGAACCTACAGGTTGGGACTGAACCGGTTCGCGGATCTGACCAACGAGGAGTACAGGGCCAGGTACTTGGGAACGAGGATCGACCCGAACCGGAGATTGGGAAGGACCTCAAGCAATCGTTACACGCCACGTGTCGGGGACGCACTCCCAGATTCCGTTGATTGGAGGAAGGAAGGTGCTGTTGTCCCAGTCAAAGACCAAGGAAGCTGCGGGAGCTGTTGGTCATTCTCAGCAATTGGTGCAGTGGAAGGAATTAATAAGATAGTGACTGGCGAACTGATTTCATTATCAGAACAAGAATTGGTGGATTGTGATAGAGGATATAACGCAGGATGCAATGGAGGACTTATGGACTATGCATTTGAGTTCATCATCAACAATGGAGGCATTGATTCCGAGGAGGATTATCCTTACCGTGCTGTTGATGGTACATGTGACCAGTACAGGAAAAATGCCAAAGTGGTTTCTATTGATGATTATGAAGATGTTAATTCCTATGATGAGTCAGCATTGAAAAAGGCCGTTGCAAATCAGCCTGTGAGCGTTGCTATTGAGGGAGGAGGAAGGGAATTTCAACTTTATTCATCCGGTGTCTTCAGCGGAAGATGTGGAACAGATCTAGATCATGGTGTTGTGGCTGTTGGGTATGGTACAGAAAACGGTCATGATTATTGGATTGTGAGGAATTCATGGGGTGCTGATTGGGGAGAGGGAGGATACATTAGAATGGAAAGAAATCTGGGTAACAGCAGATCAGGAAAGTGTGGAATTGCAATTGAGCCATCTTACCCTGTTAAGAGTAGTCCAAACCCACCCAATCCTGGACCCTCACCCCCTTCACCCGTGAAGCCACCAAATGTTTGTGACAATTACTACAGCTGTTCAAACACTGCCACTTGTTGCTGCATTTTTGAGTTTGGAAACGCTTGTTTTGAGTGGGGTTGCTGTCCTCTTGAAGGTGCTACCTGCTGTGATGACCACTACAGTTGCTGCCCTCATGACTATCCCATCTGCAACGTTAGAGCTGGAACTTGTCTCAGGAGCGAGAACAACCCATTTGGAGTGAAGGCATTGAGGCGTACTCCAGCCAAACCCCATGGGATATTTGCAGGCAACAAGGTCAACAATGCTTAA 1401 0.4811 MASATSVNMAIMLLFALFAISSALDMSIISYDNAHPDKATGRTEEEVMSLYEEWLVKHGKLYNALGEKDKRFQIFKDNLRFVDEINSANRTYRLGLNRFADLTNEEYRARYLGTRIDPNRRLGRTSSNRYTPRVGDALPDSVDWRKEGAVVPVKDQGSCGSCWSFSAIGAVEGINKIVTGELISLSEQELVDCDRGYNAGCNGGLMDYAFEFIINNGGIDSEEDYPYRAVDGTCDQYRKNAKVVSIDDYEDVNSYDESALKKAVANQPVSVAIEGGGREFQLYSSGVFSGRCGTDLDHGVVAVGYGTENGHDYWIVRNSWGADWGEGGYIRMERNLGNSRSGKCGIAIEPSYPVKSSPNPPNPGPSPPSPVKPPNVCDNYYSCSNTATCCCIFEFGNACFEWGCCPLEGATCCDDHYSCCPHDYPICNVRAGTCLRSENNPFGVKALRRTPAKPHGIFAGNKVNNA* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1837 466 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 32 383 - -
Vra6g1837 466 SMART GRAN_2 377 434 IPR000118 -
Vra6g1837 466 SMART Inhibitor_I29_2 51 107 IPR013201 -
Vra6g1837 466 Pfam Granulin 388 435 IPR000118 -
Vra6g1837 466 PANTHER CYSTEINE PROTEASE 32 383 - -
Vra6g1837 466 Pfam Papain family cysteine protease 138 354 IPR000668 GO:0006508|GO:0008234
Vra6g1837 466 CDD Peptidase_C1A 139 353 IPR039417 -
Vra6g1837 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Vra6g1837 466 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Vra6g1837 466 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Vra6g1837 466 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Vra6g1837 466 Gene3D Granulin 375 437 IPR037277 -
Vra6g1837 466 Gene3D Cysteine proteinases 31 356 - -
Vra6g1837 466 SMART pept_c1 138 354 IPR000668 GO:0006508|GO:0008234
Vra6g1837 466 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Vra6g1837 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Vra6g1837 466 SUPERFAMILY Cysteine proteinases 43 354 IPR038765 -
Vra6g1837 466 SUPERFAMILY Granulin repeat 374 408 - -
Vra6g1837 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1837 Vra-Chr6 34919066 34923448 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1837 6 34919066 34923448 Vra6g1837 6 34919066 34923448 ECH
Vra6g1837 6 34919066 34923448 Vra5g1488 5 21541591 21544003 PCT