Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1835 ATGGGCCAATCGGCGTCCTCCGCCGCAGCCGTTGCTTGTCGTCGCGAGAGGGACCAAGGCAACCGCTCTGTCAACATCTCTAAGACCAGATCCACAGCTTCGGTTTCGCCGATGGTTGGTTATTCCTATGGCACCGGCGAAGGCGACAGCGAAAACCGCCGTGTTGAGGCGGTAACCGATGGAACCACCGACTACATATCTGATCTCCCGAACGAGTGTCTGGCTTCGGTGTTTCAGTTTCTTAGCTCTGCTGATCGGAACCGCTGTTCGCTCGTTTGCCAGCGGTGGCTCCAGATCGAAGGACAGAGCCGCCACCGTCTCTCTCTGAACGCCGAAGCAGAGCTGTTTTCGGCGATTCCGTCGCTCTTTTCTCGGTTCGACTCGGTCACGAAGCTTGCGCTGAAGTGCGACCGTAGATCCGTGAGCATACGCGACGACTCGCTCGTGCTGATCTCGCAGCGGTGCCCTAACCTCACGCGCCTTAAGCTACGCGCGTGCCGGGAGCTAACCGACGCTGGAATGGAAGCGTTTGCAAAAAACTGTAAGGGATTGAAGAAGCTTTCGTGCGGATCGTGCACGTTCGGATCCAAAGGAATGAACGCGGTGCTCGACAACTGTGCCTTGCTGGAGGAGCTCTCCGTGAAGCGCCTCCGCGGAATCACCGACGCGGCAGCGGCGGAACCGATTGGACCTGGTGTCGCGGGGTCGTCGCTGAGGACCATTTGCCTGAAGGAGCTCTACAACGGACAGTGTTTTGGAACGCTTATTCTCGGCGCGAAGAATCTAAAGACCTTGAAGCTTTTCCGGTGCTCTGGCGATTGGGACCGGCTTTTTCAATTAATGGTTGATAGAATGACTAAAATGGTTGAGGTTCACCTCGAGAGGCTTCAGATTAGCGACATTGGACTGCAAGCGATTGCGAATTACTCGAATTTGGAGATTTTGCATCTTGTTAAGACCCCTGAATGTTCTGATATTGGACTTATTGCAATTGCAGATAGGTGCAAGCTTTTGCGGAAGCTTCACATTGATGGATGGAAGGCGAATCGAATTGGCGATGATGGGTTGATAGGTGTTGCTAAAGGTTGCCCTAATTTGCTTGAATTAGTGCTAATTGGGGTTAACCCTACTAAGGTAAGTTTGGAAATGTTGGCATCTAATTGCCAGAATCTTGAGCGGTTGGCTTTGTGTGGAAGTGATTCGGTCGGTGATCCTGAAATTTCTTGCATTGCTGCTAAGTGTGTGGCTTTGAAGAAACTGTGTATTAAGAGTTGTCCTGTTTCGGATCAAGGGATGGAGGCATTGGCGAATGGGTGTCCCAATTTGGTGAAAGTGAAGGTTAAGAAGTGTAAGGGGGTTACCCCTGAGGGTGGGGATTGGTTGAGGAGGACTAGAGGGTCAGTTGCTGTTAACTTAGATACTGGTGAGGCAGAACTTCAGGAAGCTAGTGCTAGTGATGGAGGGGCACAAGAAAATGGTTTAGAGTTCCCTCAAATGCCTGCCCAAATCGCTGCGGCAGCATCATCAACATCGGGCAGCACCGCCCGATCTAGTTCGTTCAAGTCGAGGTTAGGACTTTTATCTGGGAGGAGTATAGTGGCTAACACTTTGAGGAGATGGTCAGGTGGTAGCACTAGTGCACGCCATGGTTAG 1653 0.5191 MGQSASSAAAVACRRERDQGNRSVNISKTRSTASVSPMVGYSYGTGEGDSENRRVEAVTDGTTDYISDLPNECLASVFQFLSSADRNRCSLVCQRWLQIEGQSRHRLSLNAEAELFSAIPSLFSRFDSVTKLALKCDRRSVSIRDDSLVLISQRCPNLTRLKLRACRELTDAGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCALLEELSVKRLRGITDAAAAEPIGPGVAGSSLRTICLKELYNGQCFGTLILGAKNLKTLKLFRCSGDWDRLFQLMVDRMTKMVEVHLERLQISDIGLQAIANYSNLEILHLVKTPECSDIGLIAIADRCKLLRKLHIDGWKANRIGDDGLIGVAKGCPNLLELVLIGVNPTKVSLEMLASNCQNLERLALCGSDSVGDPEISCIAAKCVALKKLCIKSCPVSDQGMEALANGCPNLVKVKVKKCKGVTPEGGDWLRRTRGSVAVNLDTGEAELQEASASDGGAQENGLEFPQMPAQIAAAASSTSGSTARSSSFKSRLGLLSGRSIVANTLRRWSGGSTSARHG* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1835 550 PANTHER UNCHARACTERIZED 49 476 - -
Vra6g1835 550 Pfam Leucine Rich repeat 155 178 IPR001611 GO:0005515
Vra6g1835 550 Pfam Leucine Rich repeat 417 436 IPR001611 GO:0005515
Vra6g1835 550 Gene3D Ribonuclease Inhibitor 104 228 IPR032675 -
Vra6g1835 550 ProSiteProfiles F-box domain profile. 63 99 IPR001810 GO:0005515
Vra6g1835 550 PANTHER F-BOX PROTEIN SKIP2 49 476 - -
Vra6g1835 550 SMART LRR_CC_2 414 438 IPR006553 -
Vra6g1835 550 SMART LRR_CC_2 310 334 IPR006553 -
Vra6g1835 550 SMART LRR_CC_2 285 309 IPR006553 -
Vra6g1835 550 SMART LRR_CC_2 206 244 IPR006553 -
Vra6g1835 550 SMART LRR_CC_2 388 413 IPR006553 -
Vra6g1835 550 SMART LRR_CC_2 155 180 IPR006553 -
Vra6g1835 550 SMART LRR_CC_2 181 205 IPR006553 -
Vra6g1835 550 SMART LRR_CC_2 335 362 IPR006553 -
Vra6g1835 550 SUPERFAMILY RNI-like 109 472 - -
Vra6g1835 550 MobiDBLite consensus disorder prediction 24 39 - -
Vra6g1835 550 MobiDBLite consensus disorder prediction 1 51 - -
Vra6g1835 550 Pfam F-box domain 66 99 IPR001810 GO:0005515
Vra6g1835 550 SMART fbox_2 69 109 IPR001810 GO:0005515
Vra6g1835 550 Gene3D Ribonuclease Inhibitor 231 492 IPR032675 -
Vra6g1835 550 Gene3D - 65 103 - -
Vra6g1835 550 SUPERFAMILY F-box domain 62 99 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1835 Vra-Chr6 34880706 34882930 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1835 6 34880706 34882930 Vra6g1835 6 34880706 34882930 ECH