Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1832 ATGTCTCACCATTACCCAAAACCCCTTCTAGACACCCTATACTGCTTGGAGGACAACATTCATTTGGAGGAAGAAAAACAAAGAGAAGATGATGATTACATCGGTACAACCTCAAAACCAAACTTCTCCGATGTGGTCCTTTCAGAACAAGACCTCTTCTGGGACACCCAGGAGCTCTCTTCTCTTCTCGCCAAAGAAAACCTTAACAACCTTTCCATCTCTCTCCCAAACAACCCTTCTCTTGCTTCTTCTCGCGGAGAAGCTGTGGACTGGATTCTCAAACTGAATCTTCACCATTCCTTTTCTACCCTCACAGCACTTCTCGCAGTTAACTACCTCGACAGGTTCCTCTTCACCCTCAGATTCCAGAACGACAAGCCGTGGCTCACGCAACTCGTTGCAGTGGCGTGCCTCTCTCTTGCAGCCAAAGTTGAAGAGACCCACGTGCCCCTTTTCGTGGACCTCCAAGTGGGGGAGAGTAAGTACCTTTTTGAAGCGAAAACGGTTAAGAGAATGGAAATCTTGGTCCTTTCAACACTCGGATGGAAGATGAACCCGGTAACACCTCTCTCGTTCCTTGATTACATCACGAGGAAACTCGGCTTAAAGGGTCATCTCTGCTTGGAGTTTCTCAGAAGGTGTGAAACCGTTCTTCTCTCTGTCTTCGCAGACTCGAGATTTATGAGTTTTCTTCCTTCTGTGTTGGCAACTGCGACGATGATGCGCGTGGTGAGCGTTGTGGAGCCTGGTTTGGGAGAGGAATACCAAGATCAGCTCTTGGGTATTCTGGGAATCGACAAGGAGAAGGTGAAAGAATGCTACAAGGTGATGATGGAGGTTGTGTCAGGGAAGAGTGAAGAGGGTAAACGAGGGAATTTGAAGAAAAGGAAGTTTGAGTGCATTCAGTGTAGCCGAAACGACGTGATGGAAGGGTCGTTTAGCTGTGATAGTTCGTGTGATTCATTGAAGAAAAGTAGGAGCCAAGATCAGCTTCTATTGAAGCATTCAAACTCAGATTTTCTCACCATTCCTCGCTAG 1038 0.4701 MSHHYPKPLLDTLYCLEDNIHLEEEKQREDDDYIGTTSKPNFSDVVLSEQDLFWDTQELSSLLAKENLNNLSISLPNNPSLASSRGEAVDWILKLNLHHSFSTLTALLAVNYLDRFLFTLRFQNDKPWLTQLVAVACLSLAAKVEETHVPLFVDLQVGESKYLFEAKTVKRMEILVLSTLGWKMNPVTPLSFLDYITRKLGLKGHLCLEFLRRCETVLLSVFADSRFMSFLPSVLATATMMRVVSVVEPGLGEEYQDQLLGILGIDKEKVKECYKVMMEVVSGKSEEGKRGNLKKRKFECIQCSRNDVMEGSFSCDSSCDSLKKSRSQDQLLLKHSNSDFLTIPR* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1832 345 Gene3D - 186 275 - -
Vra6g1832 345 PANTHER CYCLIN D3.1 PROTEIN 36 322 - -
Vra6g1832 345 SMART Cyclin_C_2 187 307 IPR004367 -
Vra6g1832 345 PANTHER CYCLINS 36 322 IPR039361 -
Vra6g1832 345 Pfam Cyclin, C-terminal domain 187 287 IPR004367 -
Vra6g1832 345 SUPERFAMILY Cyclin-like 188 286 IPR036915 -
Vra6g1832 345 CDD CYCLIN 84 177 IPR013763 -
Vra6g1832 345 Gene3D - 82 185 - -
Vra6g1832 345 SMART cyclin_7 90 178 IPR013763 -
Vra6g1832 345 SMART cyclin_7 191 279 IPR013763 -
Vra6g1832 345 Pfam Cyclin, N-terminal domain 77 185 IPR006671 -
Vra6g1832 345 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Vra6g1832 345 SUPERFAMILY Cyclin-like 61 185 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1832 Vra-Chr6 34832201 34833987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1832 9 280 Core Cell Cycle Gene Families AT4G34160 50.368 2.67e-89 271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1832 6 34832201 34833987 Vra8g2458 8 42602049 42604247 ECH
Vra6g1832 6 34832201 34833987 Vra6g1832 6 34832201 34833987 ECH
Vra6g1832 6 34832201 34833987 Vra5g1484 5 21508122 21510519 PCT