Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1828 ATGGCAACTGGAAGCAGGGATATGGATCGGATCAAGGGCCCATGGAGCCCGGAGGAGGACGAGGCGCTGCAGAGACTGGTGCAGGCTCTTGGGCCGAGAAACTGGACGATGATAAGCAAGTCTATTCCTGGTCGATCCGGCAAATCATGCCGGCTACGGTGGTGCAACCAGCTCTCACCGGAAGTGGAGCACCGCCCTTTCACGCCGGAAGAGGACGATGCTATTGTCAGGGCGCACAGTAGGTTCGGTAACAAGTGGGCCACCATAGCACGTCTACTCAATGGCCGCACCGATAACGCCGTCAAAAACCACTGGAACTCTACTCTCAAGAGAAAATGCTCCGCCCTTGGTCTCGATGCAACGGATCGTCCACCCCTAAAAAGATCCGCCAGTGTCAGCGCGGGTTATTTAAACCCAAGCAGTCCATCTGAGTCCGATTTAAGCGATCCGGGCCAGCCGGCTCTGTCGACTCCTTCTGCCTTGGCCTTCTGCAGGCCCAATCTCATGGAAACCGCTTCTTCACTCTCCGATCCAGCCACGTCACTGAGTTTATGTCTTCCTGGGTTAAGGTCGGAGCTTATACAGCAGCCAGCATCGCCGCCGCTCTCTCCACCGCCCCCTCCTCCTCCTTCAGCGGCGGCGACGGTGGAAGAGCGTGGAAAGCAATTGTTCAACCCGGAGTTTTTGAGGGTGATGCAAGAAATGATAAGGAAGGAAGTGAGGAGCTACATGTCAGGGATGGAGGTGAAGAATGGTTTGAGAATACAAACGGAAGTCATTGGAAAAGCAGTGGTGAAGCGCATGGGAATCAGCAACATCAAGTGA 825 0.5503 MATGSRDMDRIKGPWSPEEDEALQRLVQALGPRNWTMISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTPEEDDAIVRAHSRFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSALGLDATDRPPLKRSASVSAGYLNPSSPSESDLSDPGQPALSTPSALAFCRPNLMETASSLSDPATSLSLCLPGLRSELIQQPASPPLSPPPPPPPSAAATVEERGKQLFNPEFLRVMQEMIRKEVRSYMSGMEVKNGLRIQTEVIGKAVVKRMGISNIK* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1828 274 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Vra6g1828 274 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 8 244 - -
Vra6g1828 274 PANTHER MYB PROTEIN-RELATED 8 244 - -
Vra6g1828 274 SMART sant 63 111 IPR001005 -
Vra6g1828 274 SMART sant 11 60 IPR001005 -
Vra6g1828 274 MobiDBLite consensus disorder prediction 133 155 - -
Vra6g1828 274 Gene3D - 65 130 - -
Vra6g1828 274 Gene3D - 11 63 - -
Vra6g1828 274 CDD SANT 14 56 IPR001005 -
Vra6g1828 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Vra6g1828 274 MobiDBLite consensus disorder prediction 195 216 - -
Vra6g1828 274 MobiDBLite consensus disorder prediction 119 158 - -
Vra6g1828 274 MobiDBLite consensus disorder prediction 198 213 - -
Vra6g1828 274 CDD SANT 66 109 IPR001005 -
Vra6g1828 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Vra6g1828 274 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Vra6g1828 274 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Vra6g1828 274 Pfam Myb-like DNA-binding domain 15 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1828 Vra-Chr6 34759456 34761009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1828 6 251 MYB Transcription Factor Family AT4G37260 50.357 3.14e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra6g1828 Myb_DNA-bind_6 9.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1828 6 34759456 34761009 Vra6g1828 6 34759456 34761009 ECH
Vra6g1828 6 34759456 34761009 Vra5g1481 5 21480307 21481363 PCT