Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1826 ATGGCAACAGCCTCAGAGAACAACGCCAGCACCACGCGCCCTCAGCGCGAGGCCAAGAAGAGAGCCGCAGCTGCCATATGCCAAATGCAGGGGAATGCCAAGAAGAAGCGCGTCGTTTTGGGAGACCTGACTAATGTCTCAGACGCCGCCGTCGCAGTTGCTGTTTCAGATACTCAACAACGAAAAAAAATCAAACTCCAGAAACCGGTGCCGACGGTTGCCACGCCGGAGAAAGTCGAGGAGAGGAGTGACCCGCAACTGTGTGGGCCGTATGTTTCGGATATATACGAGTACCTTTGTGGAATGGAGGTTCTTCCTAGTAAGAGACCGTTGCCGGATTATATTCAGAAAGTTCAGAAGGATGTGAATGCTAACATGCGTGGGGTTTTGGTGGATTGGTTGGTTGAGGTTGCCGAAGAGTATAAACTGGTTTCAGACACGTTATATTTTTGTGTGGCTTATATAGATAGGTTTTTATCCTTGAATGTATTGTCCAGACAGAGATTGCAGTTGCTTGGGGTTGGTGCAATGCTTATTGCTTCGAAATATGAAGAGATTAAACCACCTGAGGTGGAGGACTTTTGTTACATTACGGATAATACATACTCTAAGGAAGAGGTTGTGAATATGGAAGCCGATATATTGAAAGCTTTGAGGTTTGAATTGGGTGGTCCAACGGTGAAGACATTCTTGAGGAGGTTCTGTAGAGTTGGTCAAGAGGGCATTGATACATCTGATCTCCAGTTTGATTTCCTTAGCTGCTACCTTGCTGAGCTCAGTTTATTGGATTATAATTGTGTAAAGTTTGTGCCATCTTTGGTGGCAGCATCTGTTGTATTCTTAGCAAGATTTATGTTAAGATCAAAGACACATCCTTGGAATTCGACACTCCATCAGCTGACTAGATATAAACCCGCTGACTTCAAAGAATGTGTTCTAAACATACATGATTTATACCTCAGTAGGAGGGGGCCTTCTTTGCAAGCTGTCAGAGAGAAATACAAACAGCATAAGTTCAAATGTGTGGCAACAACACCGTCTCCTCCCGAGATACCACTTTCTTTTTTTGAATTTTCAGGATCAGATTCTTAG 1092 0.4432 MATASENNASTTRPQREAKKRAAAAICQMQGNAKKKRVVLGDLTNVSDAAVAVAVSDTQQRKKIKLQKPVPTVATPEKVEERSDPQLCGPYVSDIYEYLCGMEVLPSKRPLPDYIQKVQKDVNANMRGVLVDWLVEVAEEYKLVSDTLYFCVAYIDRFLSLNVLSRQRLQLLGVGAMLIASKYEEIKPPEVEDFCYITDNTYSKEEVVNMEADILKALRFELGGPTVKTFLRRFCRVGQEGIDTSDLQFDFLSCYLAELSLLDYNCVKFVPSLVAASVVFLARFMLRSKTHPWNSTLHQLTRYKPADFKECVLNIHDLYLSRRGPSLQAVREKYKQHKFKCVATTPSPPEIPLSFFEFSGSDS* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1826 363 SUPERFAMILY Cyclin-like 83 222 IPR036915 -
Vra6g1826 363 SUPERFAMILY Cyclin-like 225 350 IPR036915 -
Vra6g1826 363 PANTHER CYCLINS 24 359 IPR039361 -
Vra6g1826 363 Pfam Cyclin, N-terminal domain 94 222 IPR006671 -
Vra6g1826 363 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 24 359 - -
Vra6g1826 363 SMART Cyclin_C_2 225 348 IPR004367 -
Vra6g1826 363 SMART cyclin_7 132 216 IPR013763 -
Vra6g1826 363 SMART cyclin_7 229 317 IPR013763 -
Vra6g1826 363 Gene3D - 110 223 - -
Vra6g1826 363 ProSitePatterns Cyclins signature. 127 158 IPR006671 -
Vra6g1826 363 CDD CYCLIN 126 215 IPR013763 -
Vra6g1826 363 MobiDBLite consensus disorder prediction 1 22 - -
Vra6g1826 363 Pfam Cyclin, C-terminal domain 225 347 IPR004367 -
Vra6g1826 363 PIRSF Cyclin_A_B_D_E 1 353 IPR039361 -
Vra6g1826 363 Gene3D - 94 344 - -
Vra6g1826 363 CDD CYCLIN 225 316 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1826 Vra-Chr6 34722520 34726133 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1826 8 357 Core Cell Cycle Gene Families AT1G47230 60.055 1.32e-151 430
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1826 6 34722520 34726133 Vra6g1826 6 34722520 34726133 ECH
Vra6g1826 6 34722520 34726133 Vra5g1472 5 21385902 21388782 PCT