Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1820 ATGAAGACTCTGCAAACCATTATTCTTCTGCTGCTGCTCACAGCGTTCTTTTGCATCACCAACACCAAAGCAGAACAAAAGAAAACACACCGCCAAGCCAAAAACACCTACATAATCCACATGGACAAGTCCACCATGCCTTCAACTTTCTCCGACCACCTCAACTGGTTCGATTCCTCCCTCAAATCAGCATCAGCCACCGCAGAGATCCTCTACACCTACAAACACGTCGTTCACGGCTTCTCCACCAGGCTCACACCCCAAGAAGCAGAAACACTCGCCAACCGACCAGGAATCCTCTCAGTCACCCCAGAACTTCGATACAATCTCCACACCACAAGAACACCGCAGTTCCTCGGACTCGACAAAAGCACCACGCTCTTACCCGCGTCCCAGCAACAGAGCCAGGTCATCATCGGAGTCCTTGACACCGGCGTCTGGCCCGAGTTGAAGAGCCTCGATGACACGGGCCTGGGCCCGGTACCCGCCACGTGGAAAGGCGAGTGCGAAGTTGGCAGCAACATGAACTCCTCACACTGCAACAGAAAACTAGTGGGTGCGAGGTTTTTCTCCAAAGGCTACGAATCCGCTCTTGGACCTGTTGACTTAAGTACAGAGTCAAAGTCAGCGAGAGACGACGAGGGGCATGGGAGTCACACGCTCACCACGGCTGCAGGCTCGGTGGTTCCCGAAGCTAGCTTCTACGGTTTGGCGTCGGGCACGGCTCGTGGAATGGCGCCGCAAGCGCGCGTGGCGGTTTACAAGGTGTGCTGGCTCGGTGGGTGTTTTTCTTCCGACATAGCCGCGGGGATCGACAAGGCCATAGAAGACGGCGTGAACGTTTTATCCATGTCGATTGGGGGAAGCTTGATGGAGTATTACAGAGACATTATCGCGATTGGTACCTTCTCTGCCACGTCACACGGGATTTTAGTTTCCATGTCAGCAGGGAACGGTGGGCCCAGTTCGTCAACTCTATCCAACGTGGCGCCGTGGATAACCACGGTGGGAGCCGGAACTTTAGACCGCGATTTCCCTGCTTACATAACGCTTGGAAACGGAAAAACATACACCGGAGCCTCGCTTTATAGCGGTAAACCGTTGCCGGATTCTCCGCTTCCTCTCGTTTACGCTGGCGACGCGAGTAACTCTTCTGTTGGGTATCTTTGCTTGCAAGATTCTCTCATTCCCGAGAAGGTTTCAGGGAAGATTGTGATATGCGAGAGAGGGGGAAATCCCAGAGTGGAAAAGGGTTTGGTGGTGAAGCTAGCGGGAGGTGCTGGAATGATTTTGGCCAACAATGAAGCTTACGGGGAAGAGTTAGTTGCTGATCCTCATCTTCTTCCTGCTGCATCACTGGGCCAAAAATCGAGTCAAATTCTTAAGAGTTACGTTTCTTCTTCAGTAAATCCCACCGCTAAGATTGCTTTCGTAGGAACCCATTTGGAGGTTCAACCTTCTCCGGTTGTGGCGGCTTTCAGCTCCAGAGGACCCAACGCTCTCACGCCCAAGATTCTCAAACCGGATTTACTAGCTCCAGGGGTCAACATTTTAGCAGGTTGGACTGGCGCGGTTGGACCGACCGGGTTGACCGCTGACGACCGCCATGTCAGCTTCAACATAATTTCCGGAACCTCCATGTCTTGCCCTCACGTCAGCGGCTTAGCCGCGATTGTCAAAGGCGCGCACCCTCAATGGAGCCCTGCGGCTATTAGATCCGCACTCATGACAACAGCGTACACGAGTTACAAAAACGGCGCCGCAATTGAAGATGTTGCGACTGGGCAACCTGCAACGCCGTTCGATTATGGCGCGGGACACGTGAATCCCGTGGCCGCCCTTGATCCTGGTCTGGTGTATGATGCGGACGTGGAAGACTACTTGGGATTCTTCTGCGCGCTAAACTACACTTCGTTTCAAATCAAGCTTGCTGCGAGGAGGGACTTTACTTGTGACCCGAAGAAGGAATACAGAGTGGAGGATTTCAACTACCCTTCGTTTGCGGTTGCTTTGGAGACAGCTTCGGGGATTGGGGGTGGTTCGGATGCTCCCCATACTGTGAAGTACTCTAGGGTTTTGACTAACGTCGGAGCTCCGGGAACGTATAAAGCTTCGGTGGTGCCGTTGGGGGATTCGAATGTGAAGATTGTGGTGGAACCGGGGACACTGAGTTTCGCGCAGGAGTACGAGAAGAAGAGCTATACGGTGTCGTTTACATACACCTCCAAGCCCTCCGGGACCAGTAGCTTTGCGCGTTTGGAATGGACGGATGGAAAACATAGGGTTGCCAGCCCAATTGCGTTCAGCTGGACATGA 2316 0.5328 MKTLQTIILLLLLTAFFCITNTKAEQKKTHRQAKNTYIIHMDKSTMPSTFSDHLNWFDSSLKSASATAEILYTYKHVVHGFSTRLTPQEAETLANRPGILSVTPELRYNLHTTRTPQFLGLDKSTTLLPASQQQSQVIIGVLDTGVWPELKSLDDTGLGPVPATWKGECEVGSNMNSSHCNRKLVGARFFSKGYESALGPVDLSTESKSARDDEGHGSHTLTTAAGSVVPEASFYGLASGTARGMAPQARVAVYKVCWLGGCFSSDIAAGIDKAIEDGVNVLSMSIGGSLMEYYRDIIAIGTFSATSHGILVSMSAGNGGPSSSTLSNVAPWITTVGAGTLDRDFPAYITLGNGKTYTGASLYSGKPLPDSPLPLVYAGDASNSSVGYLCLQDSLIPEKVSGKIVICERGGNPRVEKGLVVKLAGGAGMILANNEAYGEELVADPHLLPAASLGQKSSQILKSYVSSSVNPTAKIAFVGTHLEVQPSPVVAAFSSRGPNALTPKILKPDLLAPGVNILAGWTGAVGPTGLTADDRHVSFNIISGTSMSCPHVSGLAAIVKGAHPQWSPAAIRSALMTTAYTSYKNGAAIEDVATGQPATPFDYGAGHVNPVAALDPGLVYDADVEDYLGFFCALNYTSFQIKLAARRDFTCDPKKEYRVEDFNYPSFAVALETASGIGGGSDAPHTVKYSRVLTNVGAPGTYKASVVPLGDSNVKIVVEPGTLSFAQEYEKKSYTVSFTYTSKPSGTSSFARLEWTDGKHRVASPIAFSWT* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1820 771 ProSitePatterns Serine proteases, subtilase family, serine active site. 544 554 IPR023828 -
Vra6g1820 771 Gene3D - 631 770 - -
Vra6g1820 771 Pfam Peptidase inhibitor I9 36 111 IPR010259 -
Vra6g1820 771 Gene3D Peptidase S8/S53 domain 137 627 IPR036852 GO:0004252|GO:0006508
Vra6g1820 771 Gene3D - 342 482 - -
Vra6g1820 771 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 24 769 IPR045051 -
Vra6g1820 771 CDD Peptidases_S8_3 108 580 IPR034197 -
Vra6g1820 771 Pfam Subtilase family 135 606 IPR000209 GO:0006508|GO:0008236
Vra6g1820 771 SUPERFAMILY PA domain 370 437 IPR046450 -
Vra6g1820 771 SUPERFAMILY Subtilisin-like 110 618 IPR036852 GO:0004252|GO:0006508
Vra6g1820 771 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 111 IPR037045 -
Vra6g1820 771 SUPERFAMILY Protease propeptides/inhibitors 35 108 - -
Vra6g1820 771 Pfam Fibronectin type-III domain 661 767 IPR041469 -
Vra6g1820 771 PRINTS Subtilisin serine protease family (S8) signature 134 153 IPR015500 -
Vra6g1820 771 PRINTS Subtilisin serine protease family (S8) signature 212 225 IPR015500 -
Vra6g1820 771 PRINTS Subtilisin serine protease family (S8) signature 543 559 IPR015500 -
Vra6g1820 771 CDD PA_subtilisin_like 348 475 - -
Vra6g1820 771 PANTHER SUBTILISIN-LIKE SERINE PROTEASE 24 769 - -
Vra6g1820 771 Pfam PA domain 374 458 IPR003137 -
Vra6g1820 771 ProSiteProfiles Serine proteases, subtilase domain profile. 107 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1820 Vra-Chr6 34672830 34675448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1820 4 771 Subtilisin-like Serine Gene Family AT5G67360 63.165 0.0 1003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1820 6 34672830 34675448 Vra6g1820 6 34672830 34675448 ECH
Vra6g1820 6 34672830 34675448 Vra5g1459 5 21295336 21298036 PCT