Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1812 ATGGCTCTCCAAGCTCTCAACTCACCCACAGCAACCACGTCATCTTTCCCTTTTCATGACCCAACCATTCCATTGGCAAAACGTAAGCGCTCCAAGCGTTCCCGCGACCACCCTTCCGAAGAAGAGTACCTAGCTCTCTGCCTCATCATGCTCGCTCGTGGCGGCGCCGCCACCACCACCACACCCGCACCAACCCACCGCCACATCACCGCTTCACCACCGCCACAACAACCCACCCCAGATCCTTCCTCCAAGCTCACCTACAAATGCTCTGTCTGTCACAAAACCTTTCCCTCTTACCAAGCTCTCGGGGGACACAAGGCCAGCCACCGGAAACTCGCCCTCCCCGACGACCAGCCCACCTCCTCTGCCATCACCGCCACCAGCACCGTCAGTACCGCCGGAGGCGGTCGTGCCCATGAGTGCTCCATCTGCCACAAGTCCTTCCCCACCGGACAGGCTCTCGGTGGACACAAACGTTGTCACTACGAAGGTAATAACGGTAACGGAAACAGTGTGGTAACCGCCTCCGAAGGTGTGGGGTCTACTCACACCGTGAGTCACGGCCACCACCCCCACCACCGTGATTTTGATCTCAATATCCCGGCTTTTCCCGAATTTTCAACCAAAGTCGGAGAAGACGAGGTTGAGAGCCCTCACCCTGTGATGAAGAAGCAGCGTCTCTTTGTGATTCCCAAAATTGAAATTCCTCAATTTCAGTAA 723 0.5643 MALQALNSPTATTSSFPFHDPTIPLAKRKRSKRSRDHPSEEEYLALCLIMLARGGAATTTTPAPTHRHITASPPPQQPTPDPSSKLTYKCSVCHKTFPSYQALGGHKASHRKLALPDDQPTSSAITATSTVSTAGGGRAHECSICHKSFPTGQALGGHKRCHYEGNNGNGNSVVTASEGVGSTHTVSHGHHPHHRDFDLNIPAFPEFSTKVGEDEVESPHPVMKKQRLFVIPKIEIPQFQ* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1812 240 Pfam C2H2-type zinc finger 88 112 - -
Vra6g1812 240 Pfam C2H2-type zinc finger 139 163 - -
Vra6g1812 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
Vra6g1812 240 SMART c2h2final6 140 162 IPR013087 -
Vra6g1812 240 SMART c2h2final6 88 110 IPR013087 -
Vra6g1812 240 MobiDBLite consensus disorder prediction 1 38 - -
Vra6g1812 240 Gene3D Classic Zinc Finger 86 162 - -
Vra6g1812 240 PANTHER ZINC FINGER PROTEIN ZAT10 1 230 - -
Vra6g1812 240 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Vra6g1812 240 MobiDBLite consensus disorder prediction 1 19 - -
Vra6g1812 240 SUPERFAMILY beta-beta-alpha zinc fingers 87 162 IPR036236 -
Vra6g1812 240 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 230 IPR044653 GO:0003700
Vra6g1812 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Vra6g1812 240 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Vra6g1812 240 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1812 Vra-Chr6 34597188 34598218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1812 1 236 C2H2 Transcription Factor Family AT1G27730 48.425 3.28e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra6g1812 zf-C2H2_6 9.4e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1812 6 34597188 34598218 Vra6g1812 6 34597188 34598218 ECH
Vra6g1812 6 34597188 34598218 Vra5g1457 5 21279074 21280338 PCT