Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1811 ATGGAACCTGTTGGAGCCTTTCCTGAAGGAGAATGGGATTGCTTTCGTAGAATGTTTGGCATTGAGGATCATGAGCATGATTTCACCCAGGAATTTCCTCTTTTGCTTGCTGGGGGCGATGAACTCAACATTCTGACACAGCAAGCCAATTTTTGTGCTGCTCCTGAAGCTGTTGAAAACGAGCTGATGCTTTATTCTTTAGATGCTCACAACAACTCAAATACTTCACAGTATATTTCTCAGGAAAGTAGCTATAGTAATAGTAGCAATTGTAGTGGTGATGACACTGTCTTCATTGCCAATCCGGGTAGCTCAAACTATTATTTTAGTTACCCTGATCATATGTTAGCAGATAATGCATGTGTATATTCCTTGGATGAGAAACATTTTGCCCCTTTTGCTCCTTCTCTTGCTAACATAGCAACCGAGGAGAGTGTCAAGCTGTATGAAGATTTCGCAAGTGACAGATTGGAGAATTTCGAATGCAATCAAATGGAACCTGTTGTTTTTCCCTCCAAGAGGAGGCTTGATGTTCCTGCTGAAGATAAAATCAACAACAGATCAGAGAATCACAAGAAAAAAGCTCGTGTTTTAAAAGATGTGCAAGGATGTATGAAGAACAACAACACGTGGTCCAAGAAGAATCAGAAACATGACAGCAATAGGGAAGATGCAGAAGAGAATAATGCAGGATCAGATGGACAAAGCTCTAGTAGTAACATATCAGAGGAAGATAACAAGGAAAATATTGGAGGAGCTACTTCAGAATCTAAATCTGTTCTCAACTCAAATGGAAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCCCAGAGCCTGTATGCAAGGAAAAGAAGAGAGAGAATAAACGAACGATTAAGAATCCTACAGAATCTTGTCCCTAATGGAACCAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTGAATTATGTGAAATTTTTGCAGCTCCAGATCAAGCTTTTAAGCTCTGATGATCTATGGATGTATGCTCCACTTGCTTATAATGGGCTTGACATTGGAATCAATTTGAACATGAAGAACTCCCTACCACTCTGA 1080 0.4 MEPVGAFPEGEWDCFRRMFGIEDHEHDFTQEFPLLLAGGDELNILTQQANFCAAPEAVENELMLYSLDAHNNSNTSQYISQESSYSNSSNCSGDDTVFIANPGSSNYYFSYPDHMLADNACVYSLDEKHFAPFAPSLANIATEESVKLYEDFASDRLENFECNQMEPVVFPSKRRLDVPAEDKINNRSENHKKKARVLKDVQGCMKNNNTWSKKNQKHDSNREDAEENNAGSDGQSSSSNISEEDNKENIGGATSESKSVLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGINLNMKNSLPL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1811 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 322 IPR011598 GO:0046983
Vra6g1811 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 337 IPR036638 GO:0046983
Vra6g1811 359 Gene3D - 275 331 IPR036638 GO:0046983
Vra6g1811 359 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 357 - -
Vra6g1811 359 Pfam Helix-loop-helix DNA-binding domain 283 323 IPR011598 GO:0046983
Vra6g1811 359 MobiDBLite consensus disorder prediction 212 229 - -
Vra6g1811 359 CDD bHLH_AtIND_like 274 336 - -
Vra6g1811 359 Coils Coil 208 228 - -
Vra6g1811 359 MobiDBLite consensus disorder prediction 180 285 - -
Vra6g1811 359 MobiDBLite consensus disorder prediction 180 200 - -
Vra6g1811 359 MobiDBLite consensus disorder prediction 230 277 - -
Vra6g1811 359 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 357 - -
Vra6g1811 359 SMART finulus 279 328 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1811 Vra-Chr6 34582956 34584793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1811 172 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 55.615 1.20e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra6g1811 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1811 6 34582956 34584793 Vra6g1811 6 34582956 34584793 ECH