Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1806 ATGGGAACCGAGAGTTACACTTACCTAGGACGCAATTTCAGCCAACTCAGCATCAACGACGCTTCCTCTTCCTCCGCCTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCGCCACCGCTTCTTCGCAAACGCGCCGCTTCCTCATCACCTGCGCCACCGAAAACTCCGACGATTTGATCCGTCAACTCGTCGCCGATCTCCACTCCGCCTCACTCGACGATCAGAAACAAGCCGCCATGGAAATCAGATTGCTAGCCAAAAACAAGCCGGAGAATCGACTCAAAATCGCCAAAGCAGGCGCAATCAAACCGCTGATTTCACTCATTTCTTCAACGGACCTCCAGCTCCAGGAATACGGCGTCACCGCGATTTTGAATCTCTCGCTCTGCGACGAGAACAAGGAGGCCATCGCCTCCGCAGGCGCGATTAAGCCGCTGGTTCGCGCGCTGAGCACGGGAACCGCGACGGCAAAGGAGAACGCAGCGTGCGCGCTGCTGCGGCTGTCGCAGGTGGAGGAGAACAAGGCGGCGATTGGGCGGTCCGGCGCGATTCCGCCGCTGGTGAGCCTTCTGGCGAGCGGCGGGTTCCGCGCGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCACGGTGAAGGAGAACAAGCTCAGGGCGGTGAAGGCGGGGATCATGAAGGTGCTGGTGGAGCTGATGGCGGACTTCGAGTCGAACATGGTGGACAAGTCGGCGTACGTGGTGAGCGTGCTGGTGTCAGTGCCGGAGGCGAGGGCGGCGCTGGTGGAGGAAGGCGGCGTGCCGGTGCTGGTTGAGATCGTTGAGGTGGGAACGCAGCGGCAGAAGGAAATCGCGGTTGTTATTCTGTTGCAGGTGTGTGAAGATAGCGTGGCGTATCGCTCTAGGGTGGCTCGCGAAGGTGCGATTCCTCCTTTGGTGGCTTTGTCTCAGTCCGGCACCAATCGCGCCAGGCAAAAGTCGGAGAAATTAATTGAGCTTCTGCGGCAACCAAGATCCAGCAACGGCGGCGGTCTTGCGTCAGAAGTGGCGGTGTAA 1056 0.5938 MGTESYTYLGRNFSQLSINDASSSSAFSDCNSDRSGEFATASSQTRRFLITCATENSDDLIRQLVADLHSASLDDQKQAAMEIRLLAKNKPENRLKIAKAGAIKPLISLISSTDLQLQEYGVTAILNLSLCDENKEAIASAGAIKPLVRALSTGTATAKENAACALLRLSQVEENKAAIGRSGAIPPLVSLLASGGFRAKKDASTALYSLCTVKENKLRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVSVPEARAALVEEGGVPVLVEIVEVGTQRQKEIAVVILLQVCEDSVAYRSRVAREGAIPPLVALSQSGTNRARQKSEKLIELLRQPRSSNGGGLASEVAV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1806 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 225 IPR000225 GO:0005515
Vra6g1806 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Vra6g1806 351 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Vra6g1806 351 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Vra6g1806 351 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Vra6g1806 351 SUPERFAMILY ARM repeat 58 327 IPR016024 -
Vra6g1806 351 PANTHER U BOX DOMAIN-CONTAINING 5 343 - -
Vra6g1806 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Vra6g1806 351 SMART arm_5 90 130 IPR000225 GO:0005515
Vra6g1806 351 SMART arm_5 254 294 IPR000225 GO:0005515
Vra6g1806 351 SMART arm_5 131 171 IPR000225 GO:0005515
Vra6g1806 351 SMART arm_5 172 212 IPR000225 GO:0005515
Vra6g1806 351 SMART arm_5 213 253 IPR000225 GO:0005515
Vra6g1806 351 Gene3D - 33 198 IPR011989 -
Vra6g1806 351 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 343 - -
Vra6g1806 351 Gene3D - 199 335 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1806 Vra-Chr6 34506519 34508904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1806 42 343 U-box Gene Family AT2G23140 49.669 6.11e-89 278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1806 6 34506519 34508904 Vra6g1806 6 34506519 34508904 ECH
Vra6g1806 6 34506519 34508904 Vra5g1453 5 21249794 21251440 PCT