Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1802 ATGTTGTGTGCTTGTTCGGGGGAGCAATTCAAGTTTGAAGAGGCACCACAGTCACCTGAGTCCTTGGCAACAAGGGATTTCTCTGCAAGTGGTCTTTCTTCAAGGACTGGGGATTGGGAATCCAAATTTGATGAGACGCAAGTTGAAGAAGCTGAATCTACTCTAAAAGAAACACTTTCATTAAACTATGAGGAAGCTCGGGCTTTGCTGGGGAGGCTTGAATACCAAAGAGGGAACTTTGATGCTGCCCTTCAAGTTTTTGAAGGTATAGACATAAGGGTTTTGGCCCCAAGGATGATCAGGGCAATAGCTGAAAGAACCAAGCAAAGAAAACCACGGTCAAAGGTGGATAATGTGCTTCCTAATGTAATGTCAATGCATTCAGTAAGCTTGCTTCTAGAGGCAATTTTGCTTAAATCCAAATCCTTAGAAGAACTTGGAAGATACACCGAGGCTGCGAAAGAGTGCAGAATTATTGTGGATACAGTAGAATCTGCTCTTCCAAAAGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGCTGCAAGAAATGTTCCACAAAGCATTGGAGTTGCTTCCAAATCTATGGATCAAATCTGGTTTTCTAGAAGAAGCTGTCACTGCTTATCGGAGGGCTCTAATCAAGCCATGGAACTTGGAGCCGTGGAGATTGGCCAGGGTACAAAAAGATTTGGCTACCACACTACTCTATGGTGGTGCTGAAGTAAACATACCCTCTCAGCTGCAAGTGAATGGTTTAACAACACCTATGAGTGGTACTGAAGAAGCCATACTTTTGCTGTTAATACTCTCGGGAAAGATGGCACTTCAAGAAATAGACTGGGACCCTGAAATAATGGATCATCTTACATTTTCTCTTTCAGTTACTGGAATGTTTGAATCATTGGCAGATAACGTAGAGAAGATCCTTCCGGGGGTTTATGATCGGGCAGAGAGGTGGCACTTTCTTGCTCTTTGTTACAGTGCAGCAGGACAGAATGAAGTGGCCTTGAACCTTTTGAGAAAAGCTTGTGGTAGTTCTGAAGCCAAGCATAGACCCTATTTTCCTTCATTTTTGTTTGCTGCAAAGCTGTGTTCTTTATGTCCAAACCATGCTCATGAAGGCATCAAGTTTTCACAGGAAGTTATAGATCTAGCCAAGCATCAAAATGAGCATTTTCTGGGTGAGGGCCTAAAATTTATGGGCACTTGCCAAGGGGCTGCTGCTAGAGTATCTGTACTAGATTCTGAAAGAATTATATTCCAAAGAGAGTCTTTGTACTTTCTAAATGATGCTGTCGCTCTAAATGGAAATAATGATCCAGAAGTGATACTCAGCCTTGGATTGGAAAATGCAATCCAAAGAAATTTAAATACAGCATATGACAATTTAATGATATACTCTGACATGATGGCTGGCAGCTCAAAAAGAGGTTGGCAGTTGTTAGCACTCATAGTATCAGCGGAACAGAGGTTTAAGGATGCAGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGTAGTATAGACCAGTTAGAACTATTGAGACTGAAAGCTATTCTTCAAATTACACAGCAGCAACCCAAGAAAGCAGTAGAGACCTACAGAATCTTGCTAGCAGTAATTGAATCACAAAAGGAGCATTGGCTTCAGGCTAAGGCATTCAGGCATGAGGCATTAAAACAACAGAAGTTGGAAATGGAAGTCTGGCAAGATTTGGCCACCATTTATGTAGATCTTTGCTCCTTTCTAGATGCAAAAGCTTGTGTTGACAAGGCTCAGTTGATAGAATTTTTTTCTCCAAGAAGTTGGCATATTACTGGGTTGTTGTTTGAATCTCGGACATTGCATAAGGAGGCCTTAGCTTCCTTCTTAGTCTCATTGTCAATAGAACCGGATTACATTCCCAGTATCATTTCAGCTGCAAAATTAATGCTTAAACTTGGCATGCAATCACTCCCAATCGCAAGAAGCTTTTTAATGAATGCTTTGAGATTAGATCCTACAAACCATGAGGCATGGTTTAACCTTGGACTAGTTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTGCTTTCAAGCCGCATATGAGCTGAAGCTTTCAGCTCCAGTGCAAGAATTTGAGTGA 2133 0.4135 MLCACSGEQFKFEEAPQSPESLATRDFSASGLSSRTGDWESKFDETQVEEAESTLKETLSLNYEEARALLGRLEYQRGNFDAALQVFEGIDIRVLAPRMIRAIAERTKQRKPRSKVDNVLPNVMSMHSVSLLLEAILLKSKSLEELGRYTEAAKECRIIVDTVESALPKGMPEGIGEDCKLQEMFHKALELLPNLWIKSGFLEEAVTAYRRALIKPWNLEPWRLARVQKDLATTLLYGGAEVNIPSQLQVNGLTTPMSGTEEAILLLLILSGKMALQEIDWDPEIMDHLTFSLSVTGMFESLADNVEKILPGVYDRAERWHFLALCYSAAGQNEVALNLLRKACGSSEAKHRPYFPSFLFAAKLCSLCPNHAHEGIKFSQEVIDLAKHQNEHFLGEGLKFMGTCQGAAARVSVLDSERIIFQRESLYFLNDAVALNGNNDPEVILSLGLENAIQRNLNTAYDNLMIYSDMMAGSSKRGWQLLALIVSAEQRFKDAETIVDFALDEAGSIDQLELLRLKAILQITQQQPKKAVETYRILLAVIESQKEHWLQAKAFRHEALKQQKLEMEVWQDLATIYVDLCSFLDAKACVDKAQLIEFFSPRSWHITGLLFESRTLHKEALASFLVSLSIEPDYIPSIISAAKLMLKLGMQSLPIARSFLMNALRLDPTNHEAWFNLGLVSKMEGSLQQAADCFQAAYELKLSAPVQEFE* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1802 710 SMART tpr_5 317 350 IPR019734 GO:0005515
Vra6g1802 710 SMART tpr_5 601 634 IPR019734 GO:0005515
Vra6g1802 710 SMART tpr_5 512 545 IPR019734 GO:0005515
Vra6g1802 710 SMART tpr_5 671 704 IPR019734 GO:0005515
Vra6g1802 710 SUPERFAMILY TPR-like 49 344 IPR011990 GO:0005515
Vra6g1802 710 ProSiteProfiles TPR repeat profile. 671 704 IPR019734 GO:0005515
Vra6g1802 710 Gene3D Tetratricopeptide repeat domain 540 705 IPR011990 GO:0005515
Vra6g1802 710 MobiDBLite consensus disorder prediction 14 42 - -
Vra6g1802 710 PANTHER PROTEIN NPG1 1 709 IPR043376 -
Vra6g1802 710 MobiDBLite consensus disorder prediction 21 37 - -
Vra6g1802 710 SUPERFAMILY TPR-like 424 594 IPR011990 GO:0005515
Vra6g1802 710 SUPERFAMILY TPR-like 539 695 IPR011990 GO:0005515
Vra6g1802 710 PANTHER PROTEIN NPGR1 1 709 - -
Vra6g1802 710 Gene3D Tetratricopeptide repeat domain 22 243 IPR011990 GO:0005515
Vra6g1802 710 Gene3D Tetratricopeptide repeat domain 261 539 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1802 Vra-Chr6 34451596 34455762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1802 1 709 Calmodulin-binding Proteins AT1G27460 58.205 0.0 836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1802 6 34451596 34455762 Vra6g1802 6 34451596 34455762 ECH