Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1321 ATGCCAAATCAACACCCCATTTTGCATTGTACTTTCCTCATGTTTCTCTTGTACTTTCTACTCAATGCAGCTCCTGTGAGTTGCAAATCCACCATTGAGCCATGCTCTGATAGTAACTCCTGTAATGCTCTTCTTGGCTACACCCTTTACACTGAGCTCAAGGTCTCTGAGGTTGCTTCTCTCTTCCAAATAGACCCTATTTCTCTTCTCACTGCCAATGCCTTTAACATATCCTTCTCTGATGTAGAGCATCATATTCTCCCTTGCAAACTCTTCCTTAAGGTCCCTATCACATGTTCCTGTGCTGATGGGATTAGAAAATCAGTGTCCGCCCATTACAGGACTCGTCCTTCTGATACTCTCTCTTCCATTGCAGATTCAGTTTATGGAGGTCTGGTGTCTCCTGATCAGCTTAGGGAGGCTAATTCCATAGCTGACCCTTCGATGCTAGATGTGGGTCACAACCTTGTGGTGCCACTTCCATGCACATGCTTCAATGGCAGTGATAATTCTTTGCCTTCAATTTACCTCTCCTATGTGGTAAAGCCAATGGATACTTTGGCTGCCATTGCAGCTAGGTATTTCACCACACTTACTGATTTGATGAATGTCAATGACATGGGGAGTGCAGCTATCTCTGATGGAGATATTCTTGTTGTTCCAATTCCTGCTTGTGCATCAAAATTTCCAAAATATGCCACTGATTTTGGCTTGCTTGTTCCTAATGGAAGCTACACCATTACAGCTAGTCACTGTGTGCAGTGTAGCTGTGGACCACAGAATTTAGATTTATACTGTATTCCCTCTTCTCTAGCCGTCTCTTGCTCCAGCATGCAATGCAAAAGAAGCAATCTTACACTTGGGAATGTTACCGTGCAAAAGATGAGCTCAGGTTGTAATGTGACATCGTGCAATTATGATGGTTTTGTCAATGGCAGCATATTAACAATGATGGCCTCATCTCTTCAGCCTCATTGTCCAGACCACCAACGATTCCCTCCACTTAGAGCGCCACCTTCATCTCTTACAAGGGAATCAGTTGTTGCATTTCCTCCATCTCTGTCACCATCACAGCCACCATTACTGTCACAATCACCATCATCGCCATCAGAAGGAACAGGTCTAACAGCACCCAAATCTTCAGTCATGCCCGCAACCAGATCATTTCCAGTATTCTCTCCTGGAAGTGGCCCTGTTGGTAGGATTGCTTCTGCTGCGTCCTCTTTGGTGAGTGCTATTCCCATATTGACGCCATCATTTATGTTGTTGCTTATAACGTTGATGATCCCTGTGGCTTTGTAA 1302 0.4439 MPNQHPILHCTFLMFLLYFLLNAAPVSCKSTIEPCSDSNSCNALLGYTLYTELKVSEVASLFQIDPISLLTANAFNISFSDVEHHILPCKLFLKVPITCSCADGIRKSVSAHYRTRPSDTLSSIADSVYGGLVSPDQLREANSIADPSMLDVGHNLVVPLPCTCFNGSDNSLPSIYLSYVVKPMDTLAAIAARYFTTLTDLMNVNDMGSAAISDGDILVVPIPACASKFPKYATDFGLLVPNGSYTITASHCVQCSCGPQNLDLYCIPSSLAVSCSSMQCKRSNLTLGNVTVQKMSSGCNVTSCNYDGFVNGSILTMMASSLQPHCPDHQRFPPLRAPPSSLTRESVVAFPPSLSPSQPPLLSQSPSSPSEGTGLTAPKSSVMPATRSFPVFSPGSGPVGRIASAASSLVSAIPILTPSFMLLLITLMIPVAL* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1321 433 CDD LysM 178 220 IPR018392 -
Vra6g1321 433 MobiDBLite consensus disorder prediction 352 382 - -
Vra6g1321 433 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Vra6g1321 433 CDD LysM 112 158 IPR018392 -
Vra6g1321 433 MobiDBLite consensus disorder prediction 364 382 - -
Vra6g1321 433 SMART LysM_2 112 159 IPR018392 -
Vra6g1321 433 SMART LysM_2 178 221 IPR018392 -
Vra6g1321 433 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 23 412 - -
Vra6g1321 433 Pfam LysM domain 113 159 IPR018392 -
Vra6g1321 433 Pfam LysM domain 179 221 IPR018392 -
Vra6g1321 433 Gene3D LysM domain 109 167 IPR036779 -
Vra6g1321 433 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Vra6g1321 433 SUPERFAMILY LysM domain 177 222 IPR036779 -
Vra6g1321 433 Gene3D LysM domain 168 228 IPR036779 -
Vra6g1321 433 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 23 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1321 Vra-Chr6 25531995 25534402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1321 12 432 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 59.574 7.95e-177 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1321 - - pvu:PHAVU_008G163700g 744.577