Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0747 ATGACGGGGAAGAAGAATGTGAAGGCGGCGTCAAAGGAAGGGGAAGAGGAAGGGAAGCAAACGACGTCATCTTCGACTCCGCTTTCTCATTCGCGGTCGTTGTCTTCGTCGTCGTCGTCGTCTTCCGATGAGAAAGAGTACGAGGTGCAGGACCTGCGGGACCGATTGAAATCTTCGAGAGGGAGCCGGTTCAATCTGATAGAGAATGAGTTGGGACTCAACTCAAGATGGAGCAAGTTCAGTCGCCAAGCTCTTTTCCATGGAATCTGTGGCTTCTCCGAGGACTTCGTCATTCATCCTGATAACAGGTGGTACCGGGCATGGACAAAATTCATATTGCTATGGGCAGTGTATTCATCCTTCTTCACCCCAATGGAGTTTGGATTTTTTCGTGGCTTGCCTGAGAATCTCTTTATTCTGGACATCATTGGACAACTAGCTTTTCTCGTCGATATTTTCTTGCAATTTTTTGTTGCTTACAGAGACAGCCAGACCTATCGTATGGTCTACAAGCGAACACCTATAGCTCTGCGGTATCTAAAATCTGACTTCATATTTGATCTTCTTGGGTGTATGCCATGGGACGTCATCTTCAAGGCTTCTGGACGAAGAGAGGCAGTGAGGTACCTTTTGTGGATCAGATTATACCGGGTGCGGAAAGTCGAAGATTTTTTCCACAAGTTGGAGAAGGACATACGTGTAAATTACATTACTACCAGGATTGTGAAACTGATAGTAGTCGAACTCTACTGCACCCATACAGCAGCCTGCATTTTCTACTATTTGGCTACTACTCTACCGGAATCACAAGAAGGCTACACATGGATAGGAAGTTTAAAATTGGGTGACTATAGTTATTCACATTTCAGAGAAATTGATCTTTGGATGCGCTACACAACATCTCTGTATTTCGCTATTGTTACTATGGCAACCGTTGGCTATGGAGATATACATGCAGTAAATTTGAGGGAGATGATATTCATAATGATATACGTTTCATTTGATATGATTCTCGGTGCCTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGGTCAAAGACTGAAAAGTTTAGAGACAAGATGACAGACCTATTGAAATATATGAATAGAAATAGGCTTGGAAGGGATATCCGTGAACAAATTAAGGGCCATGTACGCTTACAGTATGAGAGTAGCTACACTGAGGCTGCTGTCATTCAGGATATCCCTATTTCTATTCGAGCTAAGATATCCCAAACGTTATACTTGCCATACATCGAGCAGGTTTCTCTTTTTAAAGGATGCTCTGCAGAATTCATCAACCAGATTGTTATTAGGATCCATGAGGAGTTCTTTCTTCCTGGGGAAGTTATAATGCAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGGGTGCTGGAGGAAGTAGGCACAGCTGAAGATGGATCTGAAGAAACTGTTTCACTTCTGCAGCGTCACAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAACCATATACTGTCCGAGTTTGTGAACTGTGTAGACTCTTGCGACTTGATAAACAAACATTTACAAATATCCTAGACATATACTTTTATGATGGAAGGAAAGTATTAAACAACCTTCTAGAGGGAAAAGAGTCTTTTCGAGGTAAGCAGTTGGAGTCAGACATCACACTTCATATTGGAAAACAAGAAGCTGAGCTTGCTTTGAAGGTCAATAGTGCAGCTTTTCATGGGGATCTACATCAGCTCAAAGGCTTAATTCGAGCTGGGGCTGATCCCAACAAAACAGATTATGATGGAAGGTCACCACTGCATCTTGCAGCGTCCAGAGGACATGAAGATATCACATTTTTCCTTATTCAAGAACGTGTAGATGTCAATATTAAAGATAATTTCGGCAACACGCCCTTACTTGAAGCAGTTAAGAATGGAAATGATCGGGTTGCTTCTTTACTTGTTAAAGAAGGGGCCTCCATGAAGATCGAAAATGCTGGTAGTTTTTTGAATACAGCAGTTGCAAGGGGAGATTCAGATTATCTTAAAAGACTTTTATCCAATGGCATGGATCCTAACTCAAAAGATTATGATTACCGAAGCCCTCTTCACATAGCTGCAGCTGAAGGTTTATACTTCATGGCAAAGTTGCTATTAGAAGCAGGAGCTAGTGTTTTTAGCAAAGACAGATGGGGAAATACCCCGCTTGATGAAGCCCGGATGTGTGGAAATAAGAATCTGATCAAGTTGCTTGAAGATGCAAAATCTGCTCAACTGTTAGAATTCCCGTATTCCTCCCAAGAATTTACAGATAAAATGCACCCAAAGAAGTGCACAGTCTTCCCTTTCCACCCGTGGGATCCGAAAGATAATAGAAGACATGGAATTGTACTATGGATTCCACACTCCATCGAAGAGCTAATCAAATCAGCGGCAGAACAAATAGAATTTTCTGGGGATTCTTGTATTTTATCAGAAGATGGTGGTAAAATTACTGATGTGGACATGATTAAGGATGGTCAGAAGCTGTACTTAGTCCATGAAACACAATAA 2556 0.4151 MTGKKNVKAASKEGEEEGKQTTSSSTPLSHSRSLSSSSSSSSDEKEYEVQDLRDRLKSSRGSRFNLIENELGLNSRWSKFSRQALFHGICGFSEDFVIHPDNRWYRAWTKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQLAFLVDIFLQFFVAYRDSQTYRMVYKRTPIALRYLKSDFIFDLLGCMPWDVIFKASGRREAVRYLLWIRLYRVRKVEDFFHKLEKDIRVNYITTRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDYSYSHFREIDLWMRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLLKYMNRNRLGRDIREQIKGHVRLQYESSYTEAAVIQDIPISIRAKISQTLYLPYIEQVSLFKGCSAEFINQIVIRIHEEFFLPGEVIMQQGNVVDQLYFVCHGVLEEVGTAEDGSEETVSLLQRHSSFGEISILCNIPQPYTVRVCELCRLLRLDKQTFTNILDIYFYDGRKVLNNLLEGKESFRGKQLESDITLHIGKQEAELALKVNSAAFHGDLHQLKGLIRAGADPNKTDYDGRSPLHLAASRGHEDITFFLIQERVDVNIKDNFGNTPLLEAVKNGNDRVASLLVKEGASMKIENAGSFLNTAVARGDSDYLKRLLSNGMDPNSKDYDYRSPLHIAAAEGLYFMAKLLLEAGASVFSKDRWGNTPLDEARMCGNKNLIKLLEDAKSAQLLEFPYSSQEFTDKMHPKKCTVFPFHPWDPKDNRRHGIVLWIPHSIEELIKSAAEQIEFSGDSCILSEDGGKITDVDMIKDGQKLYLVHETQ* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0747 851 Pfam Ankyrin repeats (3 copies) 673 752 IPR002110 GO:0005515
Vra6g0747 851 Pfam Ankyrin repeats (3 copies) 577 665 IPR002110 GO:0005515
Vra6g0747 851 Pfam KHA, dimerisation domain of potassium ion channel 777 846 IPR021789 -
Vra6g0747 851 ProSiteProfiles cAMP/cGMP binding motif profile. 426 546 IPR000595 -
Vra6g0747 851 MobiDBLite consensus disorder prediction 1 48 - -
Vra6g0747 851 ProSiteProfiles Ankyrin repeat profile. 602 634 IPR002110 GO:0005515
Vra6g0747 851 Pfam Ion transport protein 106 351 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra6g0747 851 PRINTS Ankyrin repeat signature 603 618 IPR002110 GO:0005515
Vra6g0747 851 PRINTS Ankyrin repeat signature 715 729 IPR002110 GO:0005515
Vra6g0747 851 SUPERFAMILY Ankyrin repeat 575 754 IPR036770 -
Vra6g0747 851 ProSiteProfiles Ankyrin repeat region circular profile. 699 731 - -
Vra6g0747 851 PANTHER POTASSIUM CHANNEL AKT1 39 850 IPR045319 GO:0005249|GO:0006813
Vra6g0747 851 SUPERFAMILY cAMP-binding domain-like 354 543 IPR018490 -
Vra6g0747 851 CDD CAP_ED 426 540 IPR000595 -
Vra6g0747 851 ProSiteProfiles KHA domain profile. 778 851 IPR021789 -
Vra6g0747 851 ProSiteProfiles Ankyrin repeat region circular profile. 635 666 - -
Vra6g0747 851 Gene3D - 560 667 IPR036770 -
Vra6g0747 851 Gene3D - 668 760 IPR036770 -
Vra6g0747 851 SUPERFAMILY Voltage-gated potassium channels 99 351 - -
Vra6g0747 851 SMART cnmp_10 426 544 IPR000595 -
Vra6g0747 851 PANTHER POTASSIUM CHANNEL SKOR-LIKE 39 850 - -
Vra6g0747 851 Gene3D - 108 352 - -
Vra6g0747 851 SMART ANK_2a 732 761 IPR002110 GO:0005515
Vra6g0747 851 SMART ANK_2a 635 664 IPR002110 GO:0005515
Vra6g0747 851 SMART ANK_2a 699 728 IPR002110 GO:0005515
Vra6g0747 851 SMART ANK_2a 602 631 IPR002110 GO:0005515
Vra6g0747 851 SMART ANK_2a 567 598 IPR002110 GO:0005515
Vra6g0747 851 SMART ANK_2a 666 695 IPR002110 GO:0005515
Vra6g0747 851 Gene3D Helix hairpin bin 353 409 - -
Vra6g0747 851 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515
Vra6g0747 851 MobiDBLite consensus disorder prediction 20 43 - -
Vra6g0747 851 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515
Vra6g0747 851 ProSiteProfiles Ankyrin repeat profile. 635 667 IPR002110 GO:0005515
Vra6g0747 851 Pfam Cyclic nucleotide-binding domain 446 530 IPR000595 -
Vra6g0747 851 PRINTS EAG/ELK/ERG potassium channel family signature 141 151 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra6g0747 851 PRINTS EAG/ELK/ERG potassium channel family signature 250 260 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra6g0747 851 PRINTS EAG/ELK/ERG potassium channel family signature 298 315 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra6g0747 851 PRINTS EAG/ELK/ERG potassium channel family signature 342 351 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vra6g0747 851 Gene3D Jelly Rolls 410 547 IPR014710 -
Vra6g0747 851 ProSiteProfiles Ankyrin repeat region circular profile. 602 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0747 Vra-Chr6 7193070 7204783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0747 645 752 Ion Channels AT5G37500 32.117 2.42e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0747 K21867 - gmx:100814385 1536.16