Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2758 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCCTCGATGATCGGAAGAAACGGCAGCGTTGGTGGCTTTGGATTATCTTCCGGGCTCTCTCTTGGCCAGATTGAAAACCATAAGGGTCCGGAATCTCAAAGATCTATAGAAATGTTCCAGCCAAACCTGATGGAAGCTGGTCAACTTCTCCCTCTGGATATGCCCCAGAACACTTCAGAGAGCGATGTCCCAAGAATCCACGAAGATGACTTTGACAGTGCCACCAAGTCAGGAAGTGAAAACCAAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCATCAGATCCAGGAAATGGAAGCGTTCTTTAAGGAGTGTCCACACCCTGATGACAAGCAAAGGAAGGAGCTGAGTAGAGAGTTAGGGTTAGAGCCTTTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGCACTCAGATAAAGACACAGCATGAACGTCATGAGAACACACAGCTCCGAACTGAAAACGATAAACTTCGAGCTGATAACATGAGGTTCAGGGAAGCTCTCGGCAATGCCTCCTGTCCCAACTGTGGAGGACCAACAGCTATAGGGGAAATGTCATTCGATGAACATCACTTGAGGCTTGAAAATGCTCGCCTCAGAGAAGAGATTGATAGGATTTCTGCAATTGCTGCAAAGTACGTGGGAAAGCCTGTGGTGAGTTATCCACTTCTTTCTCCTTCATCTGTTCCTCCTCGTCCACTTGAGCTTGGGATTGGAGGTGGTTTTGGTGGCCAGCCTGCGGGCATTGGTGGAGAAATGTACGGTGGAGCTGCAGGAGATCTTCTTAGGTCAATCAGTGGACCTACTGAGGCTGATAAACCCATCATAATAGAGCTTGCTGTTGCAGCCATGGAGGAACTCATTGGAATGGCGCAAATGGGTGATCCTCTTTGGTTGACTACTCTGGATGGCACAACCACTGTTCTCAATGAGGATGAATACATCAGGTCTTTTCCCAGAGGAATTGGTCCTAAACCAGCTGGTTTCAAGTGTGAAGCTTCCCGAGAAACTGCAGTTGTTATCATGAACCATGTTAGCCTTGTTGAGATTCTCATGGACGTGAACCAATGGTCCACAGTGTTCTCTGGCATTGTCTCAAGAGCAATGACTTTGGAGGTGTTATCAACTGGGGTGGCAGGAAACTACAACGGTGCATTGCAAGTGATGACAGCAGAATTACAAGTACCTTCACCTCTGGTTCCAACTCGAGAGAGCTATTTTGTAAGATATTGTAAGCAGCATGGTGATGGGACTTGGGCTGTAGTGGACGTATCCTTGGATAATTTGCGTCCTAGTCCCTCAGCCAGATGTAGAAGAAGACCTTCAGGCTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTCATTTGGGTTGAGCATGTTGAGGTGGATGATAGAGGTGTTCACAATCTATACAAGCAGCTTGTTAGTTCTGGGCATGCATTTGGTGCAAAACGTTGGATTGCCACCTTGGATAGACAATGTGAAAGGCTTGCTTGCGCTATGGCAACAAACATACCCACAGTAGATGTTGGAGTGATAACAAACCAAGATGGGAGGAAGAGTATGCTGAAACTGGCAGAGAGAATGGTTATAAGTTTTTGTGCTGGAGTGAGTGCATCTACTGCACACACATGGACAACACTATCTGGAACTGGAGCTGATGATGTAAGGGTCATGACACGTAAGAGTGTTGATGATCCAGGAAGGCCTCCTGGCATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTCCCAGTGTCACCAAAAAGGGTTTTTGAATTCCTCCGTGATGAGAACTCTAGAAGTGAGTGGGATATTCTTTCGAACGGAGGAGTTGTCCAAGAAATGGCACACATTGCCAATGGAAGAGACACCGGAAATTGTGTCTCTCTACTTCGTGTGAATAGTGCAAATTCAAGCCAGAGTAACATGTTGATATTGCAAGAGAGTTGCGCAGACTCAACTGGTTCATTTGTGATATATGCTCCAGTTGATATTGTGGCAATGAACGTGGTTCTGAATGGAGGGGACCCTGATTACGTGGCCCTTCTTCCTTCAGGATTTGCTATTCTCCCAGATGGGACCACTGCACATGGAGGAAGCATCGGTGACACCGGACATGGTGGATCTCTTTTGACTGTGGCCTTCCAAATCTTGGTTGATTCAGTTCCAACAGCAAAACTCTCTCTTGGATCTGTTGCCACTGTTAACAATCTTATTGCCTGCACTGTGGAGAGAATTAAGACTGCTTTATCTGGTGAAGTTGCTTGA 2349 0.4666 MPAGIMIPARNMPSMIGRNGSVGGFGLSSGLSLGQIENHKGPESQRSIEMFQPNLMEAGQLLPLDMPQNTSESDVPRIHEDDFDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQIKTQHERHENTQLRTENDKLRADNMRFREALGNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGGGFGGQPAGIGGEMYGGAAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLTTLDGTTTVLNEDEYIRSFPRGIGPKPAGFKCEASRETAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLACAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGSIGDTGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKTALSGEVA* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2758 782 SMART HOX_1 107 170 IPR001356 GO:0003677
Vra5g2758 782 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Vra5g2758 782 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 64 779 - -
Vra5g2758 782 SUPERFAMILY Bet v1-like 294 524 - -
Vra5g2758 782 Pfam START domain 304 523 IPR002913 GO:0008289
Vra5g2758 782 Gene3D - 354 520 IPR023393 -
Vra5g2758 782 SMART START_1 303 523 IPR002913 GO:0008289
Vra5g2758 782 ProSiteProfiles START domain profile. 294 526 IPR002913 GO:0008289
Vra5g2758 782 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 779 IPR042160 -
Vra5g2758 782 CDD homeodomain 109 167 IPR001356 GO:0003677
Vra5g2758 782 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Vra5g2758 782 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Vra5g2758 782 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Vra5g2758 782 Coils Coil 172 192 - -
Vra5g2758 782 MobiDBLite consensus disorder prediction 65 117 - -
Vra5g2758 782 CDD START_ArGLABRA2_like 298 522 - -
Vra5g2758 782 SUPERFAMILY Bet v1-like 543 774 - -
Vra5g2758 782 Gene3D - 94 182 - -
Vra5g2758 782 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2758 Vra-Chr5 34775048 34782008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2758 50 782 Homeobox Transcription Factor Family AT1G05230 78.455 0.0 1167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra5g2758 START 5.8e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2758 K09338 - gmx:100809556 1455.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2758 5 34775048 34782008 Vra5g2758 5 34775048 34782008 ECH
Vra5g2758 5 34775048 34782008 Vra2g0961 2 9765050 9771268 PCT