Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2509 ATGCAGGATCCAGCGTTGTTCCAGCCCTTGAAACCCCACTTTCCCGAACAAGAGCAGCTTAAGTGTCCCCGTTGCGATTCCGTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCGCAGCCTCGCCATTTTTGCAAGAACTGCAGAAGGTATTGGACCAAAGGAGGTGCTTTGAGAAACATCCCCGTCGGGGGTGGAAGCAGAAAGAACGCCAAACGATCATCCTCGTCCACCAACACCAAACGCGCTTCCCCGTCACCTGCTCCAGAACCCGACCCGACTCGTGTTTGCCCTAACCCTGTTGTTGGTGGTGCTGGGAATTTCGGTTCTCTTTTGGCATCGGGTGCTCATTTGGGGAACCTCTTGGTGGGTCTGAAATCAAGTGGGGCGAATCTAAAAGCTGTGCAAATGGAAGAATTTGGGGAGAATGTTAGTTCGGGTCACCTGGCGGATCCTGGTTCTGGTCGGAACCCTGTGCTGGAGATTGAAAGGAATGGGAATGCAGCAAGTTTTCTGAGTATGCAAAATGGTGATTCAAGCTGTTGGAATGGTACTAATGGGTGGTCTAACCTTGCAATTTTCACTCCTGGGTCTAGCTATGAAAATTTATGA 618 0.5 MQDPALFQPLKPHFPEQEQLKCPRCDSVNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKRSSSSTNTKRASPSPAPEPDPTRVCPNPVVGGAGNFGSLLASGAHLGNLLVGLKSSGANLKAVQMEEFGENVSSGHLADPGSGRNPVLEIERNGNAASFLSMQNGDSSCWNGTNGWSNLAIFTPGSSYENL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2509 205 MobiDBLite consensus disorder prediction 64 101 - -
Vra5g2509 205 MobiDBLite consensus disorder prediction 71 87 - -
Vra5g2509 205 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 202 - -
Vra5g2509 205 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Vra5g2509 205 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Vra5g2509 205 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 202 IPR045174 GO:0003700|GO:0006355
Vra5g2509 205 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2509 Vra-Chr5 32030080 32032525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2509 11 124 C2C2-Dof Transcription Factor Family AT1G51700 57.037 2.17e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra5g2509 zf-Dof 2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2509 - - gmx:100798927 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2509 5 32030080 32032525 Vra5g2509 5 32030080 32032525 ECH
Vra5g2509 5 32030080 32032525 Vra9g0224 9 1607298 1608955 PCT