Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2359 ATGAGCAACATAAGCATGGTAGAGGCAAAGTTGCCACCAGGGTTCAGGTTCCATCCAAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTCACACACAATGATTCCCTTCTCATGATAGATGTTGACCTTAACAAGTGCGAACCTTGGGATATTCCTGACACAGCATGTGTGGGAGGGAAAGAGTGGTATTTCTATACACAAAGAGACCGTAAGTATGCAACAGGGTTACGCACAAATCGTGCCACTGCCTCAGGGTACTGGAAGGCCACAGGGAAGGACAGACCTATCCTACGCAAGGGCACCCTTGTTGGCATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGAGAAAAACTGAATGGGTGATGCATGAATTTCGCATTGAAGGGCCCCATGGACCTCCTAAAGTTTCTTCTTCTAAGGAAGACTGGGTTTTGTGTAGAGTGTTCTACAAAAACAGAGAAGTTTCAGCCAAACCTAGCATAGGTAGCTGCTATGAAGACACAGGCTCTTCATCTCTTCCTGCATTAATGGACTCTTACATTAGTTTTGATCAAACTCAAGCTCATGCAGATGAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAGAACCAAGCAAACCCTATTTTCAACCACATGACAACCATGGAGCCTAAATTACCTGCTGCTGCATATGGAGGAGCACCGAATTTGGGTTACTGCTTAGACCCTTTATCCTGTGACAGAAAAGTGTTGAAAGCTGTTTTGAGTCAGATCACAAAGATGGAAAGGAATCCTCTGAACCAAAATCTCAAAGGGTCTCCAAGCTTTGGAGAAGGAAGCTCAGAGAGTTACTTATCTGAAGTGGGGATGCCTCACCTTTGGAACAATTACTGA 900 0.45 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHNDSLLMIDVDLNKCEPWDIPDTACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKVSSSKEDWVLCRVFYKNREVSAKPSIGSCYEDTGSSSLPALMDSYISFDQTQAHADEFEQVPCFSIFSQNQANPIFNHMTTMEPKLPAAAYGGAPNLGYCLDPLSCDRKVLKAVLSQITKMERNPLNQNLKGSPSFGEGSSESYLSEVGMPHLWNNY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2359 299 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 295 - -
Vra5g2359 299 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Vra5g2359 299 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Vra5g2359 299 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Vra5g2359 299 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 295 - -
Vra5g2359 299 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2359 Vra-Chr5 30542659 30547475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2359 2 297 NAC Transcription Factor Family AT1G56010 59.937 6.10e-125 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra5g2359 NAM 1.5e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2359 5 30542659 30547475 Vra5g2359 5 30542659 30547475 ECH