Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2335 ATGGCGAAACCTGGGCGAGGTCGTCGCTCTCCCTCCGGTTCAGTCTCCGCCTCTTCCTCTCGCTCCTCATCCCCCTCCTCTTCTCGCTCCTCTGGCTCGCACACTCGCTCCCGCTCCCGCTCTCCCTCGCGCTCCAGATCTTTCTCATCCTCCTCCTCCTCTCCCTCCCGCAGCTCCCGCAGCCGCAGCCCTCCGCCGCAGAGGCGCAGAAGTCCTGCTGAAGCAGCAGCAGCAGCAGCAGCTAGGCGTGGTCGGTCTCCTCCACCTCAATCAAAGAGAGCTTCACCTCCCCCAAGGAAACCTTCTCCTGTACGGGAATCACTTGTTCTTCATGTGGAAAAGCTCAGCAGAAATGTCAATGAGGGTCATTTGAAGGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTCAATCTTCCAAAGGGGTATGGATATGTGCAGTTCAAGAGTAGAGAGGATGCCGAAAAAGCATTATTTTTCATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACTTTACCTCCTAGGCAGAAAGTTTCACCACCCCCAAAGGCTTCTGTTGCTGCTCCAAAGAGAGACACCCCCAGGACTGATAATGCTAGTGCAGATGTTGACAAGGATGGGCCAAAGCGTCAGAGAGAATCTCCTCGAAGAAAGCCTCCCTCGCCACGGAGGAGATCTCCTGTACCTCGAAGAGCTGGATCTCCAAGACGACCAGATTCTCCTCGCCGCCGTGCAGATTCTCCTGTTCGTCGCCGATTAGACTCTCCTTATCGTCGTGGAGGAGATACCCCTCCTAGGAGGCGGCCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCAAGACGCATTAGGTCCCCTGCAAGGGTCTCACCTAGAAGGATGCGTGGAAGCCCAGGGCGGAGACGTTCACCTCCTCCTCCTCCTCGACGCCGATCACCACCACCTAGACGTGCTCGCAGTCCTCCTAGAAGGTCTCCAATTGGTCGTAGACGCTCTCGTTCTCCAATACGTAGGTCAGCACGTTCACGGTCAAGGTCTTTCTCACCTCGCAGAGGTAGGCCACCTATAAGGCGTGGGAGGTCATCATCGTACTCAGATTCACCAAGTCCACGCAAGGTTTCCAGGAGATCAAAGAGTCGCAGCCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAATAGTAGCAGCAGCAGCTCACCACCACCAGCTCGCAAACCATAG 1263 0.5495 MAKPGRGRRSPSGSVSASSSRSSSPSSSRSSGSHTRSRSRSPSRSRSFSSSSSSPSRSSRSRSPPPQRRRSPAEAAAAAAARRGRSPPPQSKRASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKSREDAEKALFFMDGAQIDGNVIKARFTLPPRQKVSPPPKASVAAPKRDTPRTDNASADVDKDGPKRQRESPRRKPPSPRRRSPVPRRAGSPRRPDSPRRRADSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRIRSPARVSPRRMRGSPGRRRSPPPPPRRRSPPPRRARSPPRRSPIGRRRSRSPIRRSARSRSRSFSPRRGRPPIRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPARKP* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2335 420 MobiDBLite consensus disorder prediction 11 66 - -
Vra5g2335 420 CDD RRM_RNPS1 110 182 IPR034201 -
Vra5g2335 420 MobiDBLite consensus disorder prediction 185 420 - -
Vra5g2335 420 MobiDBLite consensus disorder prediction 1 106 - -
Vra5g2335 420 MobiDBLite consensus disorder prediction 208 228 - -
Vra5g2335 420 MobiDBLite consensus disorder prediction 248 278 - -
Vra5g2335 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 180 IPR000504 GO:0003723
Vra5g2335 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Vra5g2335 420 MobiDBLite consensus disorder prediction 400 420 - -
Vra5g2335 420 Gene3D - 5 192 IPR012677 -
Vra5g2335 420 SMART rrm1_1 109 182 IPR000504 GO:0003723
Vra5g2335 420 MobiDBLite consensus disorder prediction 229 244 - -
Vra5g2335 420 MobiDBLite consensus disorder prediction 300 371 - -
Vra5g2335 420 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 405 - -
Vra5g2335 420 SUPERFAMILY RNA-binding domain, RBD 95 191 IPR035979 GO:0003676
Vra5g2335 420 PANTHER BNAA09G56240D PROTEIN 1 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2335 Vra-Chr5 30162596 30167441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2335 110 183 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 1.56e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2335 5 30162596 30167441 Vra5g2335 5 30162596 30167441 ECH